Factsheet for Os04t0252200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0313300-01
Os04t0252200-01
Os06t0677700-00
Os07t0688500-00
Os09t0569400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51660.1	Os06t0677700-00	AT1G30460.1	16897494
AT5G51660.1	Os06t0677700-00	AT1G30460.1	18479511
AT5G51660.1	Os03t0313300-01	AT3G06560.1	16897494
AT5G51660.1	Os07t0688500-00	AT3G06560.1	16897494
AT5G51660.1	Os09t0569400-01	AT5G23880.1	16897494
AT5G51660.1	Os09t0569400-01	AT5G23880.1	18479511
AT5G51660.1	Os04t0252200-01	AT5G51660.1	16897494

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	53.11	56.89
KRH04684	Soybean	extracellular	16.6	38.1
Zm00001d004154_P002	Maize	plasma membrane	68.46	13.58
TraesCS2A01G061100.3	Wheat	nucleus	73.86	12.39
TraesCS2D01G060100.3	Wheat	cytosol, nucleus, plastid	72.2	12.15
KXG25932	Sorghum	cytosol	70.95	11.88
TraesCS2B01G074500.1	Wheat	cytosol	69.29	11.74
HORVU2Hr1G011580.28	Barley	nucleus	66.81	11.28
KRH09220	Soybean	nucleus	56.43	9.4
VIT_16s0022g01860.t01	Wine grape	cytosol, nucleus, plastid	54.77	9.37
KRH38714	Soybean	nucleus	56.02	9.32
CDY46934	Canola	cytosol	52.7	8.77
CDX91600	Canola	cytosol	52.28	8.7
Bra022557.1-P	Field mustard	cytosol	52.28	8.7
AT5G51660.1	Thale cress	cytosol	51.87	8.67
Solyc03g007100.2.1	Tomato	nucleus	49.38	8.35
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	2.9	1.15
GSMUA_Achr11P...	Banana	cytosol, plasma membrane, plastid	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A0P0W8G0	ProteinID:BAS88269.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	EnsemblPlantsGene:Os04g0252200	EnsemblPlants:Os04t0252200-01	PANTHER:PTHR10644	PANTHER:PTHR10644:SF2	UniParc:UPI000393A15A
SEG:seg	:	:	:	:	:

Description

Similar to CPSF160; nucleic acid binding. (Os04t0252200-01);Similar to CPSF160; nucleic acid binding. (Os04t0252200-02)

Coordinates

chr4:-:9904121..9916256

Molecular Weight (calculated)

25493.3 Da

IEP (calculated)

6.781

GRAVY (calculated)

0.061

Length

241 amino acids

Sequence
(BLAST)

001: MSYAAYKMMH WPTGVDHCAA GFVTHSPSDA AAFFTAATVG PGPEGDIDSA AAASRPRRLG PSPNLVVAAA NVLEVYAVRA ETAAEDGGGG TQPSSSSGAV
101: LDGISGARLE LVCYYRLHGN IESMTVLSDG AENRRATIAL AFKDAKITCL EFDDAIHGLR TSSMHCFEGP EWQHLKRGRE SFAWGPVIKA DPLGRCGAAL
201: AYGLQMIILK AAQVILSLCW SYFMSKSLHG LGVSYQSTIH A

Best Arabidopsis Sequence Match ( AT5G51660.3 )
(BLAST)

0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQILYYI PKKDVEVSNL
1301: ALLLSHIVFT YFIMHQR

Arabidopsis Description

CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.