Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH09220 | Soybean | nucleus | 79.42 | 77.33 |
| KRH38714 | Soybean | nucleus | 79.13 | 76.95 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 32.72 | 75.7 |
| Solyc03g007100.2.1 | Tomato | nucleus | 73.39 | 72.56 |
| AT5G51660.1 | Thale cress | cytosol | 74.24 | 72.54 |
| CDY46934 | Canola | cytosol | 73.74 | 71.75 |
| Bra022557.1-P | Field mustard | cytosol | 73.67 | 71.69 |
| CDX91600 | Canola | cytosol | 73.03 | 71.06 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 25.83 | 67.91 |
| TraesCS2B01G074500.1 | Wheat | cytosol | 67.07 | 66.46 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 67.28 | 66.43 |
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 67.21 | 66.13 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 66.93 | 65.62 |
| Zm00001d004153_P002 | Maize | nucleus | 11.85 | 64.98 |
| GSMUA_Achr11P... | Banana | cytosol | 10.36 | 64.89 |
| KXG25932 | Sorghum | cytosol | 66.22 | 64.79 |
| Zm00001d004154_P002 | Maize | plasma membrane | 53.02 | 61.48 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 9.37 | 54.77 |
Protein Annotations
| EntrezGene:100256706 | wikigene:100256706 | MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | ProteinID:CCB49259 | ProteinID:CCB49259.1 |
| InterPro:Cleavage/polyA-sp_fac_asu_C | UniProt:F6HAK2 | EMBL:FN595506 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006378 | GO:GO:0006379 | GO:GO:0006810 | GO:GO:0006890 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR015943 | EntrezGene:LOC100256706 | wikigene:LOC100256706 |
| PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | UniParc:UPI0002108446 | ArrayExpress:VIT_16s0022g01860 |
| EnsemblPlantsGene:VIT_16s0022g01860 | EnsemblPlants:VIT_16s0022g01860.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | RefSeq:XP_002268371 | RefSeq:XP_002268371.1 | SEG:seg |
Description
No Description!
Coordinates
chr16:+:14100069..14219500
Molecular Weight (calculated)
154813.0 Da
IEP (calculated)
6.306
GRAVY (calculated)
-0.112
Length
1409 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSYAAYKMMH WPTGIENCAS GFVTHSRADF APQIAPIQTD DLESEWPTKR QIGPLPNLIV TAANILEVYM VRVQEDDSRE SRASAETKRG GVMAGISGAA
0101: LELVCQYRLH GNVETMTVLP SGGGDNSRRR DSIILAFQDA KISVLEFDDS IHGLRTSSMH CFEGPEWFHL KRGHESFARG PLVKVDPQGR CSGVLVYGLQ
0201: MIILKASQAG YGLVGDEEAL SSGSAVSARV ESSYVISLRD LDMKHVKDFT FVHGYIEPVM VILHERELTW AGRVSWKHHT CMISALSIST TLKQHPLIWS
0301: AVNLPHDAYK LLPVPSPIGG VVVISANSIH YHSQSASCAL ALNNYAVSAD NSQEMPRSSF SVELDAANAT WLSNDVAMLS TKTGELLLLT LAYDGRVVHR
0401: LDLSKSRASV LTSGIAAIGN SLFFLGSRLG DSLLVQFTSI LSSSVKEEVG DIEGDVPSAK RLRKSSSDAL QDMVNGEELS LYGSAPNSTE TSQKTFSFSV
0501: RDSFINVGPL KDFAYGLRIN ADPKATGIAK QSNYELVCCS GHGKNGALCI LQQSIRPEMI TEVELPGCKG IWTVYHKNTR GHNADSTKMA TKDDEYHAYL
0601: IISLESRTMV LETADLLGEV TESVDYYVQG CTISAGNLFG RRRVVQVYAR GARILDGAFM TQDLPISESS TVLSVSIADP YVLLRMSDGN IQLLVGDPST
0701: CTVSINIPAV FESSKKSISA CTLYHDKGPE PWLRKTSTDA WLSTGIGEAI DGADGAAQDQ GDIYCVVSYE SGDLEIFDVP NFNCVFSVDK FMSGNAHLVD
0801: TLILEPSEDT QKVMSKNSEE EADQGRKENA HNIKVVELAM QRWSGQHSRP FLFGILTDGT ILCYHAYLYE GPESTPKTEE AVSAQNSLSI SNVSASRLRN
0901: LRFVRVPLDT YTREEALSGT TSPRMTVFKN IGGCQGLFLS GSRPLWFMVF RERIRVHPQL CDGSIVAFTV LHNINCNHGL IYVTSQGFLK ICQLPAVSSY
1001: DNYWPVQKIP LKGTPHQVTY FAEKNLYPLI VSVPVLKPLN HVLSSLVDQE AGHQLENDNL SSDELHRSYS VDEFEVRVLE PEKSGAPWQT RATIPMQSSE
1101: NALTVRVVTL FNTTTKENET LLAIGTAYVQ GEDVAARGRV LLFSVGKNTD NSQNLVSEIY SKELKGAISA VASLQGHLLI ASGPKIILHK WTGTELNGVA
1201: FFDAPPLYVV SLNIVKNFIL LGDIHRSIYF LSWKEQGAQL NLLAKDFGSL DCFATEFLID GSTLSLIVSD DQKNIQIFYY APKMSESWKG QKLLSRAEFH
1301: VGAHVTKFLR LQMLPASSDR TSATQGSDKT NRFALLFGTL DGSIGCIAPL DELTFRRLQS LQKKLVDAVP HVAGLNPRSF RQFRSNGKAH RPGPDNIVDC
1401: ELLCQWPIT
0101: LELVCQYRLH GNVETMTVLP SGGGDNSRRR DSIILAFQDA KISVLEFDDS IHGLRTSSMH CFEGPEWFHL KRGHESFARG PLVKVDPQGR CSGVLVYGLQ
0201: MIILKASQAG YGLVGDEEAL SSGSAVSARV ESSYVISLRD LDMKHVKDFT FVHGYIEPVM VILHERELTW AGRVSWKHHT CMISALSIST TLKQHPLIWS
0301: AVNLPHDAYK LLPVPSPIGG VVVISANSIH YHSQSASCAL ALNNYAVSAD NSQEMPRSSF SVELDAANAT WLSNDVAMLS TKTGELLLLT LAYDGRVVHR
0401: LDLSKSRASV LTSGIAAIGN SLFFLGSRLG DSLLVQFTSI LSSSVKEEVG DIEGDVPSAK RLRKSSSDAL QDMVNGEELS LYGSAPNSTE TSQKTFSFSV
0501: RDSFINVGPL KDFAYGLRIN ADPKATGIAK QSNYELVCCS GHGKNGALCI LQQSIRPEMI TEVELPGCKG IWTVYHKNTR GHNADSTKMA TKDDEYHAYL
0601: IISLESRTMV LETADLLGEV TESVDYYVQG CTISAGNLFG RRRVVQVYAR GARILDGAFM TQDLPISESS TVLSVSIADP YVLLRMSDGN IQLLVGDPST
0701: CTVSINIPAV FESSKKSISA CTLYHDKGPE PWLRKTSTDA WLSTGIGEAI DGADGAAQDQ GDIYCVVSYE SGDLEIFDVP NFNCVFSVDK FMSGNAHLVD
0801: TLILEPSEDT QKVMSKNSEE EADQGRKENA HNIKVVELAM QRWSGQHSRP FLFGILTDGT ILCYHAYLYE GPESTPKTEE AVSAQNSLSI SNVSASRLRN
0901: LRFVRVPLDT YTREEALSGT TSPRMTVFKN IGGCQGLFLS GSRPLWFMVF RERIRVHPQL CDGSIVAFTV LHNINCNHGL IYVTSQGFLK ICQLPAVSSY
1001: DNYWPVQKIP LKGTPHQVTY FAEKNLYPLI VSVPVLKPLN HVLSSLVDQE AGHQLENDNL SSDELHRSYS VDEFEVRVLE PEKSGAPWQT RATIPMQSSE
1101: NALTVRVVTL FNTTTKENET LLAIGTAYVQ GEDVAARGRV LLFSVGKNTD NSQNLVSEIY SKELKGAISA VASLQGHLLI ASGPKIILHK WTGTELNGVA
1201: FFDAPPLYVV SLNIVKNFIL LGDIHRSIYF LSWKEQGAQL NLLAKDFGSL DCFATEFLID GSTLSLIVSD DQKNIQIFYY APKMSESWKG QKLLSRAEFH
1301: VGAHVTKFLR LQMLPASSDR TSATQGSDKT NRFALLFGTL DGSIGCIAPL DELTFRRLQS LQKKLVDAVP HVAGLNPRSF RQFRSNGKAH RPGPDNIVDC
1401: ELLCQWPIT
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.