Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG25932 | Sorghum | cytosol | 88.97 | 75.07 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 13.58 | 68.46 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 27.33 | 61.94 |
| GSMUA_Achr11P... | Banana | cytosol | 10.95 | 59.11 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 61.48 | 53.02 |
| KRH09220 | Soybean | nucleus | 61.15 | 51.35 |
| KRH38714 | Soybean | nucleus | 60.49 | 50.72 |
| CDY46934 | Canola | cytosol | 59.26 | 49.72 |
| Bra022557.1-P | Field mustard | cytosol | 59.09 | 49.59 |
| CDX91600 | Canola | cytosol | 58.6 | 49.17 |
| Solyc03g007100.2.1 | Tomato | nucleus | 57.45 | 48.98 |
| AT5G51660.1 | Thale cress | cytosol | 58.11 | 48.96 |
| KRH04684 | Soybean | extracellular | 3.37 | 39.05 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 18.6 | 37.11 |
| Zm00001d004153_P002 | Maize | nucleus | 0.99 | 4.67 |
Protein Annotations
| MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | UniProt:A0A1D6EE88 | InterPro:Cleavage/polyA-sp_fac_asu_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR015943 | ProteinID:ONM18548.1 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 |
| UniParc:UPI0008442A85 | InterPro:WD40/YVTN_repeat-like_dom_sf | EnsemblPlantsGene:Zm00001d004154 | EnsemblPlants:Zm00001d004154_P002 | EnsemblPlants:Zm00001d004154_T002 | SEG:seg |
Description
Cleavage and polyadenylation specificity factor subunit 1
Coordinates
chr2:-:86919815..86983031
Molecular Weight (calculated)
132557.0 Da
IEP (calculated)
5.508
GRAVY (calculated)
-0.031
Length
1215 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSYAAYKMMH LPTGIDHCAA GFITHSPADA AAFSTPAPAP TAAAGPDGDI DSTAARAPRR VGPTPNLVVS AANVLEVYAV RAEVATGAED AGNSSSTGTI
0101: LDGISGARLE LVCHYRLHGN IESMAVLSDG TENRRDSIAV TFNDAKITCL EFDDSINGLR TSSMHCFEGP EWFHLKRGRE SFAWGPIIKG DPQGRCGAVL
0201: VYGLQIIILK AAQVGQSLVG EDEPTRVLSS TAVRIESSYV IDLRDLEMNH IKDFTFVHGY IEPVLVILHE REPTWAGRIS SKSQTCMLSA FSISMGLKQH
0301: PMIWSAAKLP HDAYQLLAVP PPISGILVIC ANSIHYHSQS TSCSLALNSF SSQPDGSPEI LKTSFHVELD VAKATWLSHD IVMFSSKNGE ILLLTVVYDG
0401: RAVQRLDLMK SKASVLSSGA TTLGSSFIFL GSRLADSLLV QFSCGMPTSV LPDLTDEPAD IESDLPFSKR LKRIPSDVLQ DVTSVEELSF HNKAVPNIVD
0501: SAEKISFVVR DALINVGPLK DFAYGLRTNS DPNAAGIAKQ SNYELVCCSG HGKNGTLSAL QQSIRPDLIT EVELPSCTGI WTVYYKSSRG NTTDNNEYHA
0601: YLIISLESRT MVLQTGDDLG EVTETVDYNV QGSTIAAGNL FGRCRVIQVY AKGARVLDGS FMTQELNFSM HTSESSLNSE PLAAASASIA DPYVLLKMSD
0701: GSIRLLIGDP STCTISINAP AIFASSSERI SACTLYCDRG PEPWLRKTHT DAWLSTDVGE AIDDNDNSSH DLSDIYCIIC YESGKLEIFE VPSFKRVFSV
0801: DNFVSGPAIL FDVFSRNSTK DSGIGDRDAS KVSVKKEEAA NIKIVELAMH RWSGQFSRPF LFGLLNDGTL LCYHAYYFEG SESNVQCAPF SPHGGSPDIG
0901: NATDSRLRNL RFCRVSIDIS SRDDISCLVR PRITIFNNVG GYEGLFLGGP RPTWVFVCRQ RFRVHPQVNC HLYSFCNMIL SILLCVCPHH TVALTKEGFL
1001: KICQLPSAYN YDNYWPVQKQ VRPLNQVLSS MADQELGLHM ENDVTSGGDL QEVYTVDEFE VRIMELGKSN GRWETRSTIP MQSFENALTV RIVTLQNTST
1101: KENETLMAIG TAYVQGEDVA ARGRVLLFSF SKSENSQNLV TEVYSKESKG AVSAVAALQG HLLIASGPKI TLNKWTGSEL TAVAFYDAPL HVVSLNIVSI
1201: VNTLYLYVVH EGAFI
0101: LDGISGARLE LVCHYRLHGN IESMAVLSDG TENRRDSIAV TFNDAKITCL EFDDSINGLR TSSMHCFEGP EWFHLKRGRE SFAWGPIIKG DPQGRCGAVL
0201: VYGLQIIILK AAQVGQSLVG EDEPTRVLSS TAVRIESSYV IDLRDLEMNH IKDFTFVHGY IEPVLVILHE REPTWAGRIS SKSQTCMLSA FSISMGLKQH
0301: PMIWSAAKLP HDAYQLLAVP PPISGILVIC ANSIHYHSQS TSCSLALNSF SSQPDGSPEI LKTSFHVELD VAKATWLSHD IVMFSSKNGE ILLLTVVYDG
0401: RAVQRLDLMK SKASVLSSGA TTLGSSFIFL GSRLADSLLV QFSCGMPTSV LPDLTDEPAD IESDLPFSKR LKRIPSDVLQ DVTSVEELSF HNKAVPNIVD
0501: SAEKISFVVR DALINVGPLK DFAYGLRTNS DPNAAGIAKQ SNYELVCCSG HGKNGTLSAL QQSIRPDLIT EVELPSCTGI WTVYYKSSRG NTTDNNEYHA
0601: YLIISLESRT MVLQTGDDLG EVTETVDYNV QGSTIAAGNL FGRCRVIQVY AKGARVLDGS FMTQELNFSM HTSESSLNSE PLAAASASIA DPYVLLKMSD
0701: GSIRLLIGDP STCTISINAP AIFASSSERI SACTLYCDRG PEPWLRKTHT DAWLSTDVGE AIDDNDNSSH DLSDIYCIIC YESGKLEIFE VPSFKRVFSV
0801: DNFVSGPAIL FDVFSRNSTK DSGIGDRDAS KVSVKKEEAA NIKIVELAMH RWSGQFSRPF LFGLLNDGTL LCYHAYYFEG SESNVQCAPF SPHGGSPDIG
0901: NATDSRLRNL RFCRVSIDIS SRDDISCLVR PRITIFNNVG GYEGLFLGGP RPTWVFVCRQ RFRVHPQVNC HLYSFCNMIL SILLCVCPHH TVALTKEGFL
1001: KICQLPSAYN YDNYWPVQKQ VRPLNQVLSS MADQELGLHM ENDVTSGGDL QEVYTVDEFE VRIMELGKSN GRWETRSTIP MQSFENALTV RIVTLQNTST
1101: KENETLMAIG TAYVQGEDVA ARGRVLLFSF SKSENSQNLV TEVYSKESKG AVSAVAALQG HLLIASGPKI TLNKWTGSEL TAVAFYDAPL HVVSLNIVSI
1201: VNTLYLYVVH EGAFI
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQILYYI PKKDVEVSNL
1301: ALLLSHIVFT YFIMHQR
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQILYYI PKKDVEVSNL
1301: ALLLSHIVFT YFIMHQR
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.