Factsheet for Zm00001d036594_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000023_P004
Zm00001d004153_P002
Zm00001d004154_P002
Zm00001d012429_P002
Zm00001d013380_P001
Zm00001d014378_P001
Zm00001d014379_P001
Zm00001d021105_P001
Zm00001d022535_P004
Zm00001d028920_P004
Zm00001d033843_P007
Zm00001d034054_P002
Zm00001d036594_P001
Zm00001d036595_P001
Zm00001d038093_P007
Zm00001d044213_P001
Zm00001d044552_P006
Zm00001d047607_P001
Zm00001d049442_P009

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	Zm00001d038093_P007	AT1G17760.1	18479511
AT1G30460.1	Zm00001d014378_P001	AT1G30460.1	18479511
AT1G30460.1	Zm00001d014379_P001	AT1G30460.1	18479511
AT1G30460.1	Zm00001d036594_P001	AT1G30460.1	18479511
AT1G30460.1	Zm00001d036595_P001	AT1G30460.1	18479511
AT1G30460.1	Zm00001d000023_P004	AT1G66500.1	18479511
AT1G30460.1	Zm00001d049442_P009	AT1G66500.1	18479511
AT1G30460.1	Zm00001d044213_P001	AT2G01730.1	16897494
AT1G30460.1	Zm00001d012429_P002	AT3G06560.1	16897494
AT1G30460.1	Zm00001d021105_P001	AT3G06560.1	16897494
AT1G30460.1	Zm00001d022535_P004	AT3G06560.1	16897494
AT1G30460.1	Zm00001d028920_P004	AT3G06560.1	16897494
AT1G30460.1	Zm00001d047607_P001	AT3G06560.1	16897494
AT1G30460.1	Zm00001d012429_P002	AT3G06560.1	18479511
AT1G30460.1	Zm00001d021105_P001	AT3G06560.1	18479511
AT1G30460.1	Zm00001d022535_P004	AT3G06560.1	18479511
AT1G30460.1	Zm00001d028920_P004	AT3G06560.1	18479511
AT1G30460.1	Zm00001d047607_P001	AT3G06560.1	18479511
AT1G30460.1	Zm00001d000023_P004	AT4G04885.1	18479511
AT1G30460.1	Zm00001d049442_P009	AT4G04885.1	18479511
AT1G30460.1	Zm00001d044552_P006	AT5G23880.1	16897494
AT1G30460.1	Zm00001d044552_P006	AT5G23880.1	18479511
AT1G30460.1	Zm00001d004153_P002	AT5G51660.1	16897494
AT1G30460.1	Zm00001d004154_P002	AT5G51660.1	16897494
AT1G30460.1	Zm00001d004153_P002	AT5G51660.1	18479511
AT1G30460.1	Zm00001d004154_P002	AT5G51660.1	18479511
AT1G30460.1	Zm00001d013380_P001	AT5G58040.1	16282318
AT1G30460.1	Zm00001d033843_P007	AT5G58040.1	16282318
AT1G30460.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT1G30460.1	Zm00001d033843_P007	AT5G58040.1	18479511
AT1G30460.1	Zm00001d034054_P002	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036595_P001	Maize	nucleus	38.18	98.41
Zm00001d014379_P001	Maize	nucleus	35.86	94.31
EER88812	Sorghum	cytosol, nucleus, peroxisome	91.96	92.25
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	90.88	91.88
TraesCS7D01G450100.1	Wheat	nucleus	80.06	79.69
TraesCS7A01G461800.1	Wheat	nucleus	79.91	79.54
HORVU7Hr1G106340.5	Barley	cytosol	79.13	78.89
TraesCS7B01G363200.2	Wheat	nucleus	79.29	78.56
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	82.69	77.99
GSMUA_Achr6P19820_001	Banana	nucleus	62.13	58.09
KRH36762	Soybean	nucleus	61.05	58.0
GSMUA_Achr9P30440_001	Banana	nucleus	58.42	57.53
CDX98205	Canola	nucleus	47.76	56.8
VIT_10s0003g04600.t01	Wine grape	nucleus	59.04	56.76
KRH11760	Soybean	nucleus	60.12	56.3
AT1G30460.1	Thale cress	nucleus	54.25	55.63
Solyc02g070240.2.1	Tomato	nucleus	57.34	55.29
Bra014881.1-P	Field mustard	nucleus	48.69	54.31
Bra010767.1-P	Field mustard	nucleus	51.62	53.02
CDX77591	Canola	nucleus	48.53	52.77
CDY12057	Canola	cytosol, nucleus, peroxisome	51.47	50.76
Solyc02g021760.2.1	Tomato	nucleus	53.94	50.65
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	18.39	44.74

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	UniProt:A0A1D6LPN0	ProteinID:AQK81457.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR007275
PFAM:PF04146	PFscan:PS50103	PFscan:PS50882	PANTHER:PTHR12357	PANTHER:PTHR12357:SF59	SMART:SM00356
SUPFAM:SSF90229	UniParc:UPI0008439D7C	InterPro:YTH_domain	EnsemblPlantsGene:Zm00001d036594	EnsemblPlants:Zm00001d036594_P001	EnsemblPlants:Zm00001d036594_T001
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

30-kDa cleavage and polyadenylation specificity factor 30

Coordinates

chr6:-:93929912..93936181

Molecular Weight (calculated)

70465.8 Da

IEP (calculated)

6.867

GRAVY (calculated)

-0.889

Length

647 amino acids

Sequence
(BLAST)

001: MDDSDGGLSF DFEGGLDSAP ASGGGGPVPS STDPGAGVGG GGDGLGMHGR GRGRGSYRQT VCRHWLRGLC MKGEACGFLH QFDKARMPVC RFFRDFGECR
101: EPDCAYKHSY DDVKECNMYK MGFCPNGPNC RYKHIKLPGP PPSVEEVLQK ILQMRSFNRY SQNRNNNYNH QGERPQHPQG SGLPNQNSAE NATAVDPPAG
201: GQQAQTLNQQ PPQQQQKPNT NDQAQGVSNG HQATRIATPL PQGPSRYFIV KSCNRENLEI SVQQGIWATQ RSNEAKLNEA FESTENVILI FSINRTRNFQ
301: GCAKMTSRIG GYIGGGNWKS AHGTAHFGRN FSMQWLKLCE LSFQKTHHLR NPYNDNLPVK ISRDCQELEP FIGEQLASLL YLEPDSELTA MLIAAEAKRE
401: EEKAKGVSAD EAADNQDIVL FDDNEEDEEE ESEEEEEGAG REPQGRGGRG GRGMMWPHQM PMMRGPMMAG RGFPPNMMGF GGGFGLPDPF GMPRGFPPFV
501: GPRFPGDFAR GPMPGMGFPG RPPQPFPLGL DMMMGPGRGP LMGMGGPGPG RPGRPMGMAP FMPPLPPPSN RAAVKREQQR RPAGGGDRGG DRFETVSEQG
601: GRGHDNTGNS GADGARPQPG DRSGRSALQD DGSESEEETA PRRSRKR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.