Factsheet for Zm00001d038093_P007

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000023_P004
Zm00001d004779_P001
Zm00001d007684_P001
Zm00001d013380_P001
Zm00001d014378_P001
Zm00001d014379_P001
Zm00001d033843_P007
Zm00001d036594_P001
Zm00001d036595_P001
Zm00001d049442_P009
Zm00001d053041_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	Zm00001d014378_P001	AT1G30460.1	18479511
AT1G17760.1	Zm00001d014379_P001	AT1G30460.1	18479511
AT1G17760.1	Zm00001d036594_P001	AT1G30460.1	18479511
AT1G17760.1	Zm00001d036595_P001	AT1G30460.1	18479511
AT1G17760.1	Zm00001d014378_P001	AT1G30460.1	20214900
AT1G17760.1	Zm00001d014379_P001	AT1G30460.1	20214900
AT1G17760.1	Zm00001d036594_P001	AT1G30460.1	20214900
AT1G17760.1	Zm00001d036595_P001	AT1G30460.1	20214900
AT1G17760.1	Zm00001d000023_P004	AT1G66500.1	18479511
AT1G17760.1	Zm00001d049442_P009	AT1G66500.1	18479511
AT1G17760.1	Zm00001d004779_P001	AT1G71800.1	12379796
AT1G17760.1	Zm00001d007684_P001	AT1G71800.1	12379796
AT1G17760.1	Zm00001d053041_P002	AT1G71800.1	12379796
AT1G17760.1	Zm00001d004779_P001	AT1G71800.1	18479511
AT1G17760.1	Zm00001d007684_P001	AT1G71800.1	18479511
AT1G17760.1	Zm00001d053041_P002	AT1G71800.1	18479511
AT1G17760.1	Zm00001d000023_P004	AT5G43620.1	18479511
AT1G17760.1	Zm00001d049442_P009	AT5G43620.1	18479511
AT1G17760.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT1G17760.1	Zm00001d033843_P007	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22737	Sorghum	cytosol	94.91	94.53
Os12t0571900-01	Rice	cytosol	78.71	80.44
TraesCS3D01G073700.1	Wheat	nucleus	76.04	78.34
TraesCS3A01G074000.1	Wheat	nucleus	75.77	78.07
TraesCS3B01G088300.3	Wheat	nucleus	76.17	76.68
HORVU3Hr1G013370.4	Barley	plastid	76.44	72.55
KRG94131	Soybean	cytosol, nucleus	64.26	64.95
GSMUA_Achr9P17150_001	Banana	plastid	68.27	64.72
Solyc10g050540.1.1	Tomato	nucleus	63.99	64.51
CDX96753	Canola	nucleus	58.5	60.19
AT1G17760.1	Thale cress	nucleus	57.97	58.99
Bra016588.1-P	Field mustard	nucleus	56.63	58.43
CDX83892	Canola	nucleus	58.1	58.02
VIT_11s0065g00710.t01	Wine grape	cytosol	64.66	53.37

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	UniProt:A0A1D6M355	ProteinID:AQK85614.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0031047	GO:GO:0031123	GO:GO:0042868
GO:GO:0045892	GO:GO:0060968	InterPro:HAT	InterPro:IPR011990	PFAM:PF05843	PANTHER:PTHR19980
SMART:SM00386	SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000843485B	EnsemblPlantsGene:Zm00001d038093
EnsemblPlants:Zm00001d038093_P007	EnsemblPlants:Zm00001d038093_T007	SEG:seg	:	:	:

Description

Cleavage stimulation factor subunit 77

Coordinates

chr6:+:147577082..147627637

Molecular Weight (calculated)

83909.4 Da

IEP (calculated)

7.956

GRAVY (calculated)

-0.429

Length

747 amino acids

Sequence
(BLAST)

001: MKNSGGGAAH GDGGDIYNVR AAEILANEAL LLPINEAAPI YENLLATFPT AAKYWKQYVE AYMATNNDEA AKQIFSRCLL NCLHISLWRC YINFIRRIND
101: KRGSEGLDET KKAFDFMLNY VGNDAASGPV WMEYINFLKS MPVVTPHEES HRMTTVRKVY QKAILVPTNH VEQLWKDYEN FENSVSRTLA KGLLSEYQPK
201: FNSAKAVYRE RKKYIDDIDW NVLATPPTGS YKEEQQCMAW KRLLVFEKGN PQRIDATTAN RRITFTYEQC LMYLYHHPDI WYDYAMWHVK NGSMDSASKI
301: FQRALKAIHD SEVLKYAFAE MEESRGAIQT AKTVYESLLG ENASETSLAN IQFIRFLRRT EGTEAARKYF LDARKSPSCT YHLYVAYATM AFCVDKDAKV
401: AQSVFEAGLK RFMHEPGYIL EYTDFLCRLN DDRNVRALFE RALSLLPPEE STEVWRRFAQ FEQNYGDLSS MLKVEQRRKE ALSRTSEDAL SASENTLHDI
501: VSRYSYMDLW PCSSKELDYL ARQEWLAKNI VKKVEKPAML NSGSMLDKGA AGFSASARLL PQSAKVVRPE TSQMVIYDPR QMKGPEFAAT SSGYTKEVEA
601: TLKVLSPSMV SFIKNLPAIE GPSPDIDVVL SVLLQSTLPV AQSAGKAGGV SELSGVGKTG LNQNGSVHRP PRERRKDVER QGAQEEEDAS AVQSRAAVPR
701: DIFRLRQIQR SRGLGVGGAA VSQSGSSAFS FSGGGSAFSG DHSASTD

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.