Factsheet for Zm00001d004779_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013380_P001
Zm00001d018112_P004
Zm00001d023775_P001
Zm00001d033843_P007
Zm00001d034054_P002
Zm00001d037200_P004
Zm00001d038093_P007
Zm00001d044869_P001
Zm00001d052198_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	Zm00001d038093_P007	AT1G17760.1	12379796
AT1G71800.1	Zm00001d038093_P007	AT1G17760.1	18479511
AT1G71800.1	Zm00001d018112_P004	AT5G10350.1	18479511
AT1G71800.1	Zm00001d023775_P001	AT5G10350.1	18479511
AT1G71800.1	Zm00001d037200_P004	AT5G10350.1	18479511
AT1G71800.1	Zm00001d044869_P001	AT5G10350.1	18479511
AT1G71800.1	Zm00001d052198_P002	AT5G10350.1	18479511
AT1G71800.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT1G71800.1	Zm00001d033843_P007	AT5G58040.1	18479511
AT1G71800.1	Zm00001d034054_P002	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27890	Sorghum	cytosol	90.83	91.02
TraesCS4B01G094500.1	Wheat	nucleus	77.8	77.96
TraesCS4D01G091300.1	Wheat	nucleus	76.99	77.14
Zm00001d053041_P002	Maize	cytosol	90.63	76.33
Os11t0176100-01	Rice	nucleus	73.52	72.93
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	76.78	70.86
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	26.27	57.33
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	33.6	54.82
GSMUA_Achr10P...	Banana	nucleus	41.34	52.45
KRH35025	Soybean	nucleus	47.66	42.94
KRG91748	Soybean	nucleus	47.66	42.39
Solyc02g069160.2.1	Tomato	nucleus	43.58	42.04
CDX68301	Canola	cytosol, nucleus, plastid	39.31	41.96
CDY36682	Canola	cytosol, nucleus, plastid	38.9	41.52
AT1G71800.1	Thale cress	nucleus	38.7	41.21
PGSC0003DMT400026767	Potato	nucleus	42.57	41.06
Bra007985.1-P	Field mustard	nucleus	37.47	40.8
CDY03684	Canola	nucleus	37.47	40.8
Bra003913.1-P	Field mustard	plastid	39.1	39.43
VIT_18s0001g01800.t01	Wine grape	nucleus	42.16	37.98
CDY37934	Canola	nucleus	37.47	32.74
PGSC0003DMT400033572	Potato	plastid	25.46	30.79
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.02	27.31
Zm00001d024806_P001	Maize	cytosol	4.68	6.8

Protein Annotations

Gene3D:1.10.20.70	EntrezGene:100272317	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	UniProt:B4FMY5	EMBL:BT038473
InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge	InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031124	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR038192	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM19566.1	PFAM:PF00076	PFAM:PF14304
PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B6D61	EnsemblPlantsGene:Zm00001d004779	EnsemblPlants:Zm00001d004779_P001	EnsemblPlants:Zm00001d004779_T001
SEG:seg	:	:	:	:	:

Description

ribosomal protein L7 ribosomal protein L7

Coordinates

chr2:-:138647642..138657256

Molecular Weight (calculated)

52634.9 Da

IEP (calculated)

6.602

GRAVY (calculated)

-0.327

Length

491 amino acids

Sequence
(BLAST)

001: MAAAPVGAQN RCVFVGNIPY DATEEQLVQI CEEVGPVVSF RLVIDKETGK PKGYGFCEYK DEETALSARR NLQGYEINGR QLRVDFAENG RNTDRNREKG
101: RGGPGMTSNV DSQKQLAGTS VVGEANLHQP VGLPPAIHAA SVMAGVLGGA QTANVQNGLP VQYGLGNDPL THYLARMSRH QLHEVMVELK FLATQNKEQS
201: KTLLQGIPQL PKALFQAQIM LGMVTPQMMH MAKSQQPSGS LSQSSSHLNE PYPQTDAMIP LVSRPSSLPT NIPPNPTVLQ EQTATLHSIP QHQHASQPLV
301: KMFPHGHQSG IAAQSPMLHQ PLDGSSSVPT QSLVTSVGLT SQVQLPLVPQ HPGPSVMPTS VPQLPLTHPH LAQVAVAPET LPNEISTLAE FTHPSKLRKL
401: EDGTSVPGIV NSSHAVYTVP LQAVGPSGPS GSYSAGSVSL QQPGNEEQLT PDVESALLQQ VLQLTPEQLS SLPPEQQQQV IELQKMLSVS K

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.