Factsheet for Solyc02g069160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g005320.2.1
Solyc10g050540.1.1
Solyc12g038540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	Solyc10g050540.1.1	AT1G17760.1	12379796
AT1G71800.1	Solyc10g050540.1.1	AT1G17760.1	18479511
AT1G71800.1	Solyc07g005320.2.1	AT5G58040.1	18479511
AT1G71800.1	Solyc12g038540.1.1	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026767	Potato	nucleus	93.12	93.12
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	35.56	80.44
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	29.67	50.17
GSMUA_Achr10P...	Banana	nucleus	34.58	45.48
KRH35025	Soybean	nucleus	47.94	44.77
KXG27890	Sorghum	cytosol	42.63	44.29
AT1G71800.1	Thale cress	nucleus	39.88	44.03
CDY36682	Canola	cytosol, nucleus, plastid	39.69	43.91
Bra007985.1-P	Field mustard	nucleus	38.9	43.9
CDY03684	Canola	nucleus	38.9	43.9
KRG91748	Soybean	nucleus	47.54	43.84
Zm00001d004779_P001	Maize	nucleus	42.04	43.58
CDX68301	Canola	cytosol, nucleus, plastid	38.9	43.04
Os11t0176100-01	Rice	nucleus	41.45	42.63
VIT_18s0001g01800.t01	Wine grape	nucleus	44.79	41.83
TraesCS4B01G094500.1	Wheat	nucleus	40.08	41.63
TraesCS4D01G091300.1	Wheat	nucleus	40.08	41.63
Bra003913.1-P	Field mustard	plastid	38.9	40.66
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	40.67	38.91
Zm00001d053041_P002	Maize	cytosol	42.04	36.71
CDY37934	Canola	nucleus	38.51	34.88
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.0	25.93

Protein Annotations

Gene3D:1.10.20.70	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge	InterPro:CSTF_C
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005847	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031124	GO:GO:0098789	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR038192	UniProt:K4B7P8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304
PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc02g069160.2	EnsemblPlants:Solyc02g069160.2.1	UniParc:UPI0002767EE1	SEG:seg

Description

No Description!

Coordinates

chr2:+:39103770..39111209

Molecular Weight (calculated)

54835.3 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.425

Length

509 amino acids

Sequence
(BLAST)

001: MATSDSQRRR VFVGNIPYDA TEEQLMQICE EVGPVVSFRL VIDKETGKPK GYGFCEYKDE ETALSARRNL KGYEINGRQL RVDFAENDKN SDRNREQGRG
101: GPGMTVNVGD PQKHIGGPVF TVDSALQQPL GMSVAMTAAA VMAGTLGAAQ SGCSFNQSGI DPLTLHMSKL SRSQLNDVMS EFKAMCTQNK EQTRQLLLAI
201: PNLSKALFLA QLILGMVTQP MLQTPNIQQS AAPKLQPLVL DSQQSQQLAT QSLLGLPPLP PSLLPQAQPQ TQLALSQNQV LQSQPNPSRN PSVNATQVNV
301: SINPPVQVGT SVAVKQQMQP FFLQQAGPVA SMNFTYNSQL GTEKTSYPPP PSSMRTPSLE QGSQGNPSVV SGVLDNTNKD SRRPQAPNNS SLIAIPAYPS
401: GLPEVKRGAA YNLDPLSRPS KTTRLNDGIS YALPDASVST PQSGCSTQVL AAAEMSNPDK QATQVQLPSD VESALLQQVL GLTPEQLSAL PPDQQQQVIQ
501: LQQMLRQPT

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.