Factsheet for HORVU4Hr1G019040.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013370.4
HORVU4Hr1G009390.7
HORVU5Hr1G095960.3
HORVU6Hr1G077700.12

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	HORVU3Hr1G013370.4	AT1G17760.1	12379796
AT1G71800.1	HORVU3Hr1G013370.4	AT1G17760.1	18479511
AT1G71800.1	HORVU6Hr1G077700.12	AT5G10350.1	18479511
AT1G71800.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511
AT1G71800.1	HORVU5Hr1G095960.3	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G094500.1	Wheat	nucleus	86.84	94.29
TraesCS4D01G091300.1	Wheat	nucleus	86.65	94.08
KXG27890	Sorghum	cytosol	73.12	79.39
Os11t0176100-01	Rice	nucleus	72.56	77.98
Zm00001d004779_P001	Maize	nucleus	70.86	76.78
Zm00001d053041_P002	Maize	cytosol	71.43	65.18
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	30.64	54.15
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	22.74	53.78
GSMUA_Achr10P...	Banana	nucleus	37.41	51.42
KRH35025	Soybean	nucleus	43.61	42.57
KRG91748	Soybean	nucleus	43.61	42.03
CDY03684	Canola	nucleus	35.15	41.46
Bra007985.1-P	Field mustard	nucleus	35.15	41.46
Solyc02g069160.2.1	Tomato	nucleus	38.91	40.67
CDY36682	Canola	cytosol, nucleus, plastid	35.15	40.65
CDX68301	Canola	cytosol, nucleus, plastid	35.15	40.65
AT1G71800.1	Thale cress	nucleus	35.15	40.56
PGSC0003DMT400026767	Potato	nucleus	37.97	39.69
Bra003913.1-P	Field mustard	plastid	34.96	38.19
HORVU7Hr1G098160.1	Barley	nucleus, plastid	15.6	37.22
VIT_18s0001g01800.t01	Wine grape	nucleus	37.97	37.06
HORVU2Hr1G041890.1	Barley	nucleus	8.65	33.82
CDY37934	Canola	nucleus	34.59	32.74
PGSC0003DMT400033572	Potato	plastid	24.25	31.77
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.9	26.85

Protein Annotations

Gene3D:1.10.20.70	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	UniProt:A0A287NFV3	InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge
InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0031047
GO:GO:0031123	GO:GO:0031124	GO:GO:0040007	GO:GO:0042868	GO:GO:0045892	GO:GO:0048589
GO:GO:0060968	EnsemblPlantsGene:HORVU4Hr1G019040	EnsemblPlants:HORVU4Hr1G019040.4	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR038192
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304	PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000B481F47
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:88985039..88990131

Molecular Weight (calculated)

57655.4 Da

IEP (calculated)

7.804

GRAVY (calculated)

-0.562

Length

532 amino acids

Sequence
(BLAST)

001: YPDQTRLAGN SEASRKQQQR TSASGPYPAA DAAPRRRRRP QLSMAAAPAG PQNRCVFVGN IPYDATEEQL VQICEEVGPV VSFRLVVDKE TGKPKGYGFC
101: EYKDEETALS ARRNLQGYEV NGRQLRVDFA ENGRNTDKNR EKGRGGPGMS SSVDAQKQLT TTPAVGETSL HQLIGLPPAI HAASVMAGVL GGAQTANVQN
201: GLPVQFGLGN DPLTHYLARM SRHQLYEIMS ELKTLTTQNN DLAKKLLQGI PQLPKALFQA QIMLGLVTPQ MMQMAKSQQP SISLAQSSHL NESFPQSDAV
301: IPIVHRPPPN PNAIQEQAPL HNFPQYQHSS QPPVKMFLHG HQSGVLTHPP MLSQPFGTSS SVPTQPPVTS GGLISQVQPS FLTQHPRPPV MPTNVQQLPS
401: TNPHLPQVAA EPEIPQKEVR LPDRTSHQAE LDHPSKLRKL EDGTSTPGIA NNNPAVYSAP SQVVVPSGPS GSYSSGAVNF QQPENEAPQL TPDDESALLQ
501: QVLQLTPEQL SSLPVEQQQQ VIQLQKMLSA GK

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.