Factsheet for HORVU5Hr1G095960.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G019040.4
HORVU5Hr1G109220.1
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT5G60940.1	HORVU4Hr1G019040.4	AT1G71800.1	18479511
AT5G60940.1	HORVU5Hr1G109220.1	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G392400.1	Wheat	cytosol	95.74	95.52
TraesCS5D01G402200.1	Wheat	cytosol	94.09	95.44
TraesCS5B01G397200.1	Wheat	cytosol	94.8	94.13
KXG37531	Sorghum	cytosol	82.74	82.74
Os03t0754900-02	Rice	cytosol	82.98	80.88
Zm00001d034054_P002	Maize	cytosol	81.09	76.73
GSMUA_Achr6P35010_001	Banana	cytosol	58.39	73.95
PGSC0003DMT400059810	Potato	cytosol	27.9	71.95
Solyc12g038540.1.1	Tomato	cytosol	10.64	69.23
KRH54731	Soybean	cytosol, nucleus	65.25	64.94
KRH63183	Soybean	cytosol	47.52	62.62
AT5G60940.1	Thale cress	cytosol	61.47	60.61
VIT_17s0000g05080.t01	Wine grape	cytosol	68.56	59.92
CDY58694	Canola	cytosol	60.76	59.35
CDY02182	Canola	cytosol	58.39	58.95
Bra012994.1-P	Field mustard	cytosol	58.16	55.03
Solyc12g038530.1.1	Tomato	cytosol	37.83	53.69
Solyc12g038550.1.1	Tomato	plastid	25.3	39.48

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	ProteinID:AAG49000.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU5Hr1G095960	EnsemblPlants:HORVU5Hr1G095960.3	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	UniProt:Q9ARL8
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00000A4B25	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Putative cleavage stimulation factor subunit 1 [Source:UniProtKB/TrEMBL;Acc:Q9ARL8]

Coordinates

chrchr5H:-:600088785..600093060

Molecular Weight (calculated)

45927.2 Da

IEP (calculated)

8.050

GRAVY (calculated)

-0.248

Length

423 amino acids

Sequence
(BLAST)

001: MDAAVQEAKL LRQVNALIVA HLRDQNLTQA AAAVAAATMT PKADASLPNH LLRLVAKGLA AEREEAARGG GAPPAFDSAG GGGLARPLGT SAVDFSVQNV
101: RGPSKTFPKH ETRHISDHKN VARCAKFSPD GKHFATGSGD TSIKFFEVSK IKQTMLGDSK EGPGRPVVRT FYDHVQPIND LDFHPISPIL ISAAKDNTIK
201: FFEFSKTAAR KAFRVIQDTH NVRSVCFHPC GDYILAGTDH PVAHLYDVNT FTCFLSANPQ DSSAAINQVR YSGTGSMYVT ASKDGSLRIW DGVSAECVRP
301: IIGAHGSVEA TSAIFTKDER YILSSGKDSC IKLWEVGTGR LVKQYPGVVN TQFRCQAVFN ETEEFVLSTD EQNNEVVVWD ALTSERVARL PSGHTGAPRW
401: LEHSPVDAVF VTCGNDRSVR FWK

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.