Factsheet for VIT_17s0000g05080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04600.t01
VIT_16s0050g00590.t01
VIT_18s0001g01800.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	VIT_10s0003g04600.t01	AT1G30460.1	18479511
AT5G60940.1	VIT_18s0001g01800.t01	AT1G71800.1	18479511
AT5G60940.1	VIT_16s0050g00590.t01	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P35010_001	Banana	cytosol	55.58	80.54
PGSC0003DMT400059810	Potato	cytosol	27.27	80.49
Solyc12g038540.1.1	Tomato	cytosol	10.74	80.0
KRH54731	Soybean	cytosol, nucleus	67.36	76.71
KRH63183	Soybean	cytosol	48.35	72.9
TraesCS5D01G402200.1	Wheat	cytosol	60.12	69.78
HORVU5Hr1G095960.3	Barley	cytosol	59.92	68.56
Os03t0754900-02	Rice	cytosol	60.95	67.97
KXG37531	Sorghum	cytosol	59.3	67.85
TraesCS5A01G392400.1	Wheat	cytosol	59.09	67.45
TraesCS5B01G397200.1	Wheat	cytosol	59.3	67.37
AT5G60940.1	Thale cress	cytosol	59.71	67.37
CDY02182	Canola	cytosol	57.02	65.87
CDY58694	Canola	cytosol	58.26	65.13
Solyc12g038530.1.1	Tomato	cytosol	39.67	64.43
Zm00001d034054_P002	Maize	cytosol	58.47	63.31
Bra012994.1-P	Field mustard	cytosol	57.02	61.74
Solyc12g038550.1.1	Tomato	plastid	21.9	39.11

Protein Annotations

EntrezGene:100267233	wikigene:100267233	MapMan:16.2.1.3.3	Gene3D:2.130.10.10	ProteinID:CBI15329	ProteinID:CBI15329.3
UniProt:D7SIL8	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100267233	wikigene:LOC100267233	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0001BE0BB0	ArrayExpress:VIT_17s0000g05080	EnsemblPlantsGene:VIT_17s0000g05080	EnsemblPlants:VIT_17s0000g05080.t01	unigene:Vvi.26450	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002265349	RefSeq:XP_002265349.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:5559256..5578406

Molecular Weight (calculated)

53522.5 Da

IEP (calculated)

7.479

GRAVY (calculated)

-0.242

Length

484 amino acids

Sequence
(BLAST)

001: MGHASLNSQR FKTFEQIQAQ ISSLSLSFPP KSHLSDSQMD ELQRKMEPNL EQTLQEGKLY RQINALIVAY LRDYNLTQAA SAVASATMTP LNVDTPPYKL
101: IDLVAKGLAV EKDEMLKGGV PSAAFLDSGA VMPVTYGSIP APRTGYDRFA VHDTKGSSKS FPKHETRHVS EHKNLARCAR FSLDGRFVAT GSADMSIKLF
201: EISKIKQMML PDANTRDGPV RPVIRTFYDH IQPINDLDFH PQSTVLISGA KDHTIKFFDF SKTVAKRAFR VIQDTHNVRS VSFHPSGDFL LAGTDHPVAH
301: LYDVNTFQCY LSANVQDLGI SASINQVRYS SNGDMYVTAS KDGAIRLWDG VTANCVRSIV GAHGTAEATS ASFTKDQRFV LSCGKDSSVK LWEIGSGKLV
401: KQYLGAAHTQ LRCQAVFNET EEFVLSIDEQ SNEIVVWDAL TAEIVARLPS NHIGAPRWLE HSPTEAAFVS CGTDRSVRFW KEIL

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.