CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68301
CDX77591
CDX80392
CDX88053
CDX98205
CDY03684
CDY12057
CDY36682
CDY37934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	CDX77591	AT1G30460.1	18479511
AT5G60940.1	CDX98205	AT1G30460.1	18479511
AT5G60940.1	CDY12057	AT1G30460.1	18479511
AT5G60940.1	CDX68301	AT1G71800.1	18479511
AT5G60940.1	CDY03684	AT1G71800.1	18479511
AT5G60940.1	CDY36682	AT1G71800.1	18479511
AT5G60940.1	CDY37934	AT1G71800.1	18479511
AT5G60940.1	CDX80392	AT5G23880.1	18479511
AT5G60940.1	CDX88053	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58694	Canola	cytosol	97.14	94.0
Bra012994.1-P	Field mustard	cytosol	99.05	92.84
AT5G60940.1	Thale cress	cytosol	89.02	86.95
Solyc12g038540.1.1	Tomato	cytosol	11.46	73.85
PGSC0003DMT400059810	Potato	cytosol	26.97	68.9
GSMUA_Achr6P35010_001	Banana	cytosol	53.22	66.77
KRH54731	Soybean	cytosol, nucleus	65.63	64.71
KRH63183	Soybean	cytosol	47.02	61.37
KXG37531	Sorghum	cytosol	60.86	60.28
TraesCS5D01G402200.1	Wheat	cytosol	59.9	60.19
TraesCS5A01G392400.1	Wheat	cytosol	59.43	58.73
TraesCS5B01G397200.1	Wheat	cytosol	59.67	58.69
Os03t0754900-02	Rice	cytosol	60.62	58.53
HORVU5Hr1G095960.3	Barley	cytosol	58.95	58.39
VIT_17s0000g05080.t01	Wine grape	cytosol	65.87	57.02
Zm00001d034054_P002	Maize	cytosol	59.19	55.48

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	EnsemblPlants:CDY02182	ProteinID:CDY02182	ProteinID:CDY02182.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00113590001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE5681	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaA03g39850D

Coordinates

chrLK031932:-:552778..555259

Molecular Weight (calculated)

45892.1 Da

IEP (calculated)

8.697

GRAVY (calculated)

-0.252

Length

419 amino acids

Sequence
(BLAST)

001: MEISGSLEQA LQEGNILRQL NALIVASDVA SATMTPLNVE VSPNRLLELV AKGLAAENNG SLRGVSSSVL LPTSYGSVTN PRTASIDFSA THVKGSSKTL
101: PKHESKQLSE HKSVVRCARF SSDGMFFATG GADTSIKLFE VPKVKQMLSG DTQARPLIRS FYDHAEPIND LDFHPRSTIL VSSAKDNCIK FFDFSKTTAK
201: RAFKVFQDTH NVRSVSFHPS GEFLLAGTDH AVPHLYDVNT YQCFLPSSFP DNGVNGGINQ VRYSSTGSVY VTASKDGAIR LFDGVSAKCV RSISSAHGKA
301: EVTSAVFTRD QRFVLSSGKD STVKVWEIAS GRMVKEYIGA KRLKLRSQAI FNDTEEFVIS IDEGNNEVVT WDARTAEKVA KWPSNHNGVP RWIEHSPVEP
401: VFVTCGTTDR SVRFWKESV

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.