Factsheet for Os03t0754900-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0677700-00
Os09t0569400-01
Os11t0176100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	Os06t0677700-00	AT1G30460.1	18479511
AT5G60940.1	Os11t0176100-01	AT1G71800.1	18479511
AT5G60940.1	Os09t0569400-01	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37531	Sorghum	cytosol	82.26	84.4
TraesCS5D01G402200.1	Wheat	cytosol	80.65	83.93
HORVU5Hr1G095960.3	Barley	cytosol	80.88	82.98
TraesCS5B01G397200.1	Wheat	cytosol	81.34	82.86
TraesCS5A01G392400.1	Wheat	cytosol	80.65	82.55
Zm00001d034054_P002	Maize	cytosol	79.95	77.63
GSMUA_Achr6P35010_001	Banana	cytosol	57.83	75.15
PGSC0003DMT400059810	Potato	cytosol	25.81	68.29
KRH54731	Soybean	cytosol, nucleus	66.36	67.76
Solyc12g038540.1.1	Tomato	cytosol	10.14	67.69
KRH63183	Soybean	cytosol	47.23	63.86
AT5G60940.1	Thale cress	cytosol	61.06	61.77
VIT_17s0000g05080.t01	Wine grape	cytosol	67.97	60.95
CDY58694	Canola	cytosol	60.6	60.74
CDY02182	Canola	cytosol	58.53	60.62
Bra012994.1-P	Field mustard	cytosol	58.53	56.82
Solyc12g038530.1.1	Tomato	cytosol	37.1	54.03
Solyc12g038550.1.1	Tomato	plastid	22.58	36.16

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	EntrezGene:4334149	ProteinID:AAG45490.1	ProteinID:AAR01689.1	ProteinID:ABF98938.1
ProteinID:BAS86441.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlantsGene:Os03g0754900	EnsemblPlants:Os03t0754900-02	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	UniProt:Q9FNU4	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000009E5DE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_015630492.1	SEG:seg	:	:	:	:

Description

OsWD40-93Similar to Cleavage stimulation factor, 50 kDa subunit. (Os03t0754900-01);Similar to Cleavage stimulation factor, 50 kDa subunit. (Os03t0754900-02)

Coordinates

chr3:+:31134469..31139684

Molecular Weight (calculated)

47124.4 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.232

Length

434 amino acids

Sequence
(BLAST)

001: MDAAVQEAKL LRQVNALIVA HLRDHNLTQA AAAVAAATMT PLAPPEPDGD DSVPANQLLR LVAKGLAVER EETGRGGGAF DSAAAAAGYG GLLPPLGTNA
101: VDFSTQDVKG SSKSFPKHEA RHVSDHKNVV RCAKFSPDGK YFASGSGDTS IKFFEVAKIK QMMLGDSKDG PVRPVIRTFY DHTQPINDLD FHPESPILIS
201: AAKDNTIRFF DFSKTVARKA FRVIQDTHNV RSVCFHPCGD YLLAGTDHPV AHLYDINTFT CYLSANSHDS NAAINQVRYS STGSLYVTAS KDGSLRIWDG
301: ISAECVRPII GAHASAEVTS AIFTKDERYV LSCGKDSCIK LWEVGSGRLV KQYVGAVHRQ FRCQAVFNQT EEFVVSTDEQ NSEVVVWDAL TAENVARLPS
401: GHTGAPRWLG HSPAEPAFVT CGNDRSVRFW KQTV

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.