Factsheet for Os09t0569400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0754900-02
Os04t0252200-01
Os04t0581100-01
Os06t0677700-00
Os07t0693900-01
Os09t0397900-01
Os09t0569400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	Os06t0677700-00	AT1G30460.1	16897494
AT5G23880.1	Os06t0677700-00	AT1G30460.1	18479511
AT5G23880.1	Os09t0397900-01	AT2G01730.1	16897494
AT5G23880.1	Os09t0397900-01	AT2G01730.1	18479511
AT5G23880.1	Os04t0581100-01	AT4G10500.1	21798944
AT5G23880.1	Os07t0693900-01	AT5G01400.1	17008405
AT5G23880.1	Os09t0569400-01	AT5G23880.1	16897494
AT5G23880.1	Os04t0252200-01	AT5G51660.1	16897494
AT5G23880.1	Os04t0252200-01	AT5G51660.1	17008405
AT5G23880.1	Os04t0252200-01	AT5G51660.1	18479511
AT5G23880.1	Os03t0754900-02	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G464200.1	Wheat	cytosol	89.7	89.7
TraesCS5A01G453700.5	Wheat	cytosol	89.7	89.58
TraesCS5B01G462500.2	Wheat	cytosol	89.43	89.31
EER93127	Sorghum	cytosol	88.89	88.89
Zm00001d044552_P006	Maize	cytosol, plasma membrane	87.4	84.2
HORVU5Hr1G109220.1	Barley	plastid	89.02	83.38
GSMUA_Achr1P15280_001	Banana	cytosol	76.69	77.01
VIT_16s0050g00590.t01	Wine grape	cytosol	75.47	75.27
KRH38460	Soybean	cytosol	74.8	74.7
KRH08941	Soybean	cytosol, nucleus	73.58	73.58
KRH30256	Soybean	cytosol	66.53	72.63
CDX80392	Canola	cytosol	71.82	71.72
AT5G23880.1	Thale cress	cytosol	71.68	71.58
Bra009712.1-P	Field mustard	cytosol	71.54	71.45
CDX88053	Canola	cytosol	71.27	71.18
Solyc03g025540.2.1	Tomato	nucleus	71.0	70.91
KRH30262	Soybean	cytosol	47.83	63.38
Os09t0397900-01	Rice	cytosol	14.5	19.14
Os03t0852900-01	Rice	plastid	18.02	19.0

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	EntrezGene:4347905	EMBL:AK063384	EMBL:AK070608
ProteinID:BAD46223.1	ProteinID:BAF25892.1	ProteinID:BAT09500.1	InterPro:Beta_Casp	InterPro:CPSF2	InterPro:CPSF2_MBL
ncoils:Coil	InterPro:Cpsf2_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0006397
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009506	GO:GO:0009987
GO:GO:0016042	GO:GO:0016787	GO:GO:0035194	GO:GO:0040029	InterPro:IPR036866	InterPro:Metallo-B-lactamas
EnsemblPlantsGene:Os09g0569400	EnsemblPlants:Os09t0569400-01	PFAM:PF07521	PFAM:PF10996	PFAM:PF13299	PFAM:PF16661
PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	UniProt:Q652P4	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849
SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI000043A512	RefSeq:XP_015611669.1	SEG:seg	:

Description

Beta-lactamase-like domain containing protein. (Os09t0569400-01)

Coordinates

chr9:-:22720434..22727500

Molecular Weight (calculated)

81380.5 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.114

Length

738 amino acids

Sequence
(BLAST)

001: MGTSVQVTPL SGAYGEGPLC YLLAVDGFRF LLDCGWTDLC DPSHLQPLAK VAPTIDAVLL SHADTMHLGA LPYAMKHLGL SAPVYATEPV FRLGILTLYD
101: YFISRRQVSD FDLFTLDDID AAFQNVVRLK YSQNHLLNDK GEGIVIAPHV AGHDLGGTVW KITKDGEDVV YAVDFNHRKE RHLNGTALGS FVRPAVLITD
201: AYNALNNHVY KRQQDQDFID ALVKVLTGGG SVLLPIDTAG RVLEILLILE QYWAQRHLIY PIYFLTNVST STVDYVKSFL EWMNDSISKS FEHTRDNAFL
301: LKCVTQIINK DELEKLGDAP KVVLASMASL EVGFSHDIFV DMANEAKNLV LFTEKGQFGT LARMLQVDPP PKAVKVTMSK RIPLVGDELK AYEEEQERIK
401: KEEALKASLN KEEEKKASLG SNAKASDPMV IDASTSRKPS NAGSKFGGNV DILIDGFVPP SSSVAPMFPF FENTSEWDDF GEVINPEDYL MKQEEMDNTL
501: MPGAGDGMDS MLDEGSARLL LDSTPSKVIS NEMTVQVKCS LAYMDFEGRS DGRSVKSVIA HVAPLKLVLV HGSAEATEHL KMHCSKNSDL HVYAPQIEET
601: IDVTSDLCAY KVQLSEKLMS NVISKKLGEH EIAWVDAEVG KTDDKLTLLP PSSTPAAHKS VLVGDLKLAD FKQFLANKGL QVEFAGGALR CGEYITLRKI
701: GDAGQKGSTG SQQIVIEGPL CEDYYKIREL LYSQFYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.