CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88812
EER93127
EES01080
EES12710
KXG25932
KXG37042
KXG37531

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	EER88812	AT1G30460.1	16897494
AT5G23880.1	EER88812	AT1G30460.1	18479511
AT5G23880.1	EES01080	AT2G01730.1	16897494
AT5G23880.1	EES01080	AT2G01730.1	18479511
AT5G23880.1	EES12710	AT4G10500.1	21798944
AT5G23880.1	KXG37042	AT5G01400.1	17008405
AT5G23880.1	EER93127	AT5G23880.1	16897494
AT5G23880.1	KXG25932	AT5G51660.1	16897494
AT5G23880.1	KXG25932	AT5G51660.1	17008405
AT5G23880.1	KXG25932	AT5G51660.1	18479511
AT5G23880.1	KXG37531	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044552_P006	Maize	cytosol, plasma membrane	96.75	93.21
Os09t0569400-01	Rice	cytosol	88.89	88.89
TraesCS5D01G464200.1	Wheat	cytosol	87.94	87.94
TraesCS5B01G462500.2	Wheat	cytosol	87.94	87.82
TraesCS5A01G453700.5	Wheat	cytosol	87.94	87.82
HORVU5Hr1G109220.1	Barley	plastid	87.53	81.98
GSMUA_Achr1P15280_001	Banana	cytosol	75.61	75.92
VIT_16s0050g00590.t01	Wine grape	cytosol	73.98	73.78
KRH38460	Soybean	cytosol	73.71	73.61
KRH08941	Soybean	cytosol, nucleus	72.63	72.63
CDX80392	Canola	cytosol	71.41	71.31
KRH30256	Soybean	cytosol	65.18	71.15
Bra009712.1-P	Field mustard	cytosol	71.0	70.91
AT5G23880.1	Thale cress	cytosol	70.87	70.77
Solyc03g025540.2.1	Tomato	nucleus	70.73	70.64
CDX88053	Canola	cytosol	70.73	70.64
KRH30262	Soybean	cytosol	47.83	63.38
EES01080	Sorghum	cytosol	15.18	20.07
EER90498	Sorghum	plastid	16.53	17.55

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.60.15.10	EntrezGene:8079657	InterPro:Beta_Casp	UniProt:C5WT39	InterPro:CPSF2
InterPro:CPSF2_MBL	ncoils:Coil	InterPro:Cpsf2_C	EnsemblPlants:EER93127	ProteinID:EER93127	ProteinID:EER93127.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005847	GO:GO:0006139
GO:GO:0006378	GO:GO:0006379	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506
GO:GO:0009987	GO:GO:0035194	GO:GO:0040029	InterPro:IPR036866	InterPro:Metallo-B-lactamas	PFAM:PF07521
PFAM:PF10996	PFAM:PF13299	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL
InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027	EnsemblPlantsGene:SORBI_3001G020000	SUPFAM:SSF56281	unigene:Sbi.8254
UniParc:UPI0001A82897	RefSeq:XP_002466129.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:1663460..1671583

Molecular Weight (calculated)

81877.5 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.116

Length

738 amino acids

Sequence
(BLAST)

001: MGTSVQVTPL SGAYGEGPLC YLLAVDGFRF LLDCGWTDLC DTSQLQPLAK VAPTVDAVLL SHPDMMHLGA LPYAMKHLGL SAPVYATEPV FRLGLLTMYD
101: HFLSRWQVSD FDLFTLDDVD AAFQNVVRLK YSQNYLLNDK GEGIVIAPHV AGHLLGGTVW KITKDGEDVV YAVDFNHRKE RHLNGTVLGS FVRPAVLITD
201: AYNALNNQGY RKKQDQDFID SLIKVLATGG SVLLPVDTAG RVLELLLLLD TYWDERRLQY PIYFLTNVST STVDYVKSFL EWMRDQIAKS FESNRANAFL
301: LKKVMLIINK EELEKLGDAP KVVLASMASL EVGFSHDIFV EMANEARNLV LFTEKGQFGT LARMLQVDPP PKAVKVTMSK RIPLVGDELK AYEEEQERIK
401: KEKALKASLV KEEELKASLG SNAKASDPMV IDASSSRKSA NAGSHFGGNT DILIDGFVPP STSVAPMFPF FENTAEWDDF GEVINPDDYM MKQEEMDNTL
501: MLGPGDGLDG KIDDGSARLL LDSTPSKVIS NEMTVQVKCS LVYMDFEGRS DGRSVKSVIA HVAPLKLVLV HGSAEATEHL KMHCTKNLDL HVHAPQIEET
601: IDVTSDLCAY KVQLSEKLMS NIISKKLGEH EIAWVDAEVG KEDEKLILLP PSSTPPPHKP VLVGDLKLSD FKQFLENKGW QVEFAGGALR CGEYIMVRKI
701: GDSSQKGSTG SQQIVIEGPL CEDYYKIREL LYSQFYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.