Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80392 | Canola | cytosol | 93.64 | 93.64 |
| Bra009712.1-P | Field mustard | cytosol | 93.37 | 93.37 |
| CDX88053 | Canola | cytosol | 93.1 | 93.1 |
| KRH38460 | Soybean | cytosol | 79.3 | 79.3 |
| KRH08941 | Soybean | cytosol, nucleus | 79.16 | 79.27 |
| VIT_16s0050g00590.t01 | Wine grape | cytosol | 77.27 | 77.16 |
| Solyc03g025540.2.1 | Tomato | nucleus | 77.0 | 77.0 |
| KRH30256 | Soybean | cytosol | 69.96 | 76.48 |
| GSMUA_Achr1P15280_001 | Banana | cytosol | 71.58 | 71.97 |
| Os09t0569400-01 | Rice | cytosol | 71.58 | 71.68 |
| EER93127 | Sorghum | cytosol | 70.77 | 70.87 |
| TraesCS5B01G462500.2 | Wheat | cytosol | 69.82 | 69.82 |
| TraesCS5D01G464200.1 | Wheat | cytosol | 69.55 | 69.65 |
| TraesCS5A01G453700.5 | Wheat | cytosol | 69.55 | 69.55 |
| Zm00001d044552_P006 | Maize | cytosol, plasma membrane | 70.64 | 68.15 |
| KRH30262 | Soybean | cytosol | 50.47 | 66.97 |
| HORVU5Hr1G109220.1 | Barley | plastid | 69.69 | 65.36 |
| AT2G01730.1 | Thale cress | cytoskeleton, cytosol, plasma membrane | 15.83 | 19.09 |
| AT1G61010.4 | Thale cress | cytosol | 17.46 | 18.61 |
Protein Annotations
| MapMan:16.2.1.2.2 | Gene3D:3.60.15.10 | EntrezGene:832453 | ProteinID:AED93228.1 | EMBL:AF283277 | ArrayExpress:AT5G23880 |
| EnsemblPlantsGene:AT5G23880 | RefSeq:AT5G23880 | TAIR:AT5G23880 | RefSeq:AT5G23880-TAIR-G | EnsemblPlants:AT5G23880.1 | TAIR:AT5G23880.1 |
| EMBL:AY034982 | Unigene:At.25191 | ProteinID:BAB10061.1 | EMBL:BT004374 | InterPro:Beta_Casp | InterPro:CPSF2 |
| InterPro:CPSF2_MBL | ncoils:Coil | InterPro:Cpsf2_C | Symbol:EMB1265 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005847 | GO:GO:0006139 | GO:GO:0006378 |
| GO:GO:0006379 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 |
| GO:GO:0035194 | GO:GO:0040029 | InterPro:IPR036866 | InterPro:Metallo-B-lactamas | RefSeq:NP_197776.1 | PFAM:PF07521 |
| PFAM:PF10996 | PFAM:PF13299 | PFAM:PF16661 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11203 |
| PANTHER:PTHR11203:SF5 | UniProt:Q9LKF9 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 |
| SUPFAM:SSF56281 | UniParc:UPI000000C350 | : | : | : | : |
Description
CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
Coordinates
chr5:+:8052439..8058465
Molecular Weight (calculated)
82144.0 Da
IEP (calculated)
4.970
GRAVY (calculated)
-0.163
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.