Factsheet for AT2G01730.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, cytoskeleton

Predictor Summary:

nucleus 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, plasma membrane
Any Predictor:	cytoskeleton, cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G060590.1	Barley	cytosol	25.77	79.8
VIT_01s0011g05780.t01	Wine grape	cytosol	12.07	78.72
CDY66642	Canola	cytosol	77.16	76.91
Bra026637.1-P	Field mustard	cytosol	76.84	76.59
CDY09421	Canola	cytosol	76.84	76.59
KRH70353	Soybean	cytosol	57.42	66.17
TraesCS5D01G210400.1	Wheat	cytosol	53.02	58.88
TraesCS5A01G203800.1	Wheat	cytosol	52.85	58.7
Zm00001d044213_P001	Maize	cytosol	53.34	58.6
Os09t0397900-01	Rice	cytosol	52.85	57.96
EES01080	Sorghum	cytosol	52.53	57.71
HORVU5Hr1G060570.5	Barley	cytosol	52.37	57.42
Solyc04g008030.1.1	Tomato	cytosol	60.69	57.32
TraesCS5B01G202500.1	Wheat	cytosol	42.58	56.86
GSMUA_Achr3P07540_001	Banana	cytosol	49.92	46.43
PGSC0003DMT400075788	Potato	extracellular	18.92	32.95
AT1G61010.4	Thale cress	cytosol	30.67	27.13
AT5G23880.1	Thale cress	cytosol	19.09	15.83

Protein Annotations

MapMan:16.2.1.2.4	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	EntrezGene:814702	ProteinID:AAD12712.1	ProteinID:AEC05489.1
EMBL:AK221561	ArrayExpress:AT2G01730	EnsemblPlantsGene:AT2G01730	RefSeq:AT2G01730	TAIR:AT2G01730	RefSeq:AT2G01730-TAIR-G
EnsemblPlants:AT2G01730.1	TAIR:AT2G01730.1	Symbol:ATCPSF73-II	EMBL:AY168923	Unigene:At.42473	InterPro:Beta_Casp
GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0016787
GO:GO:0030154	GO:GO:0090305	InterPro:IPR036866	InterPro:Metallo-B-lactamas	RefSeq:NP_178282.2	PFAM:PF07521
PFAM:PF10996	PFAM:PF16661	PO:PO:0000293	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	UniProt:Q8GUU3
InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI0000196A93

Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]

Coordinates

chr2:+:320433..323963

Molecular Weight (calculated)

68040.5 Da

IEP (calculated)

7.417

GRAVY (calculated)

-0.064

Length

613 amino acids

Sequence
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.