Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G060590.1 | Barley | cytosol | 25.19 | 83.84 |
| TraesCS5B01G202500.1 | Wheat | cytosol | 44.31 | 63.62 |
| KRH70353 | Soybean | cytosol | 50.38 | 62.41 |
| Os09t0397900-01 | Rice | cytosol | 51.59 | 60.82 |
| TraesCS5D01G210400.1 | Wheat | cytosol | 50.83 | 60.69 |
| TraesCS5A01G203800.1 | Wheat | cytosol | 50.83 | 60.69 |
| HORVU5Hr1G060570.5 | Barley | cytosol | 50.53 | 59.57 |
| EES01080 | Sorghum | cytosol | 49.62 | 58.6 |
| Zm00001d044213_P001 | Maize | cytosol | 49.17 | 58.06 |
| VIT_01s0011g05780.t01 | Wine grape | cytosol | 8.19 | 57.45 |
| Solyc04g008030.1.1 | Tomato | cytosol | 49.47 | 50.23 |
| AT2G01730.1 | Thale cress | cytoskeleton, cytosol, plasma membrane | 46.43 | 49.92 |
| CDY66642 | Canola | cytosol | 46.13 | 49.43 |
| CDY09421 | Canola | cytosol | 46.13 | 49.43 |
| Bra026637.1-P | Field mustard | cytosol | 45.98 | 49.27 |
| PGSC0003DMT400075788 | Potato | extracellular | 16.54 | 30.97 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 21.85 | 22.33 |
| GSMUA_Achr1P15280_001 | Banana | cytosol | 19.42 | 17.41 |
Protein Annotations
| MapMan:16.2.1.2.4 | InterPro:Beta_Casp | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010197 | GO:GO:0016043 | GO:GO:0030154 |
| EnsemblPlantsGene:GSMUA_Achr3G07540_001 | EnsemblPlants:GSMUA_Achr3P07540_001 | EnsemblPlants:GSMUA_Achr3T07540_001 | InterPro:IPR036866 | UniProt:M0SCM1 | InterPro:Metallo-B-lactamas |
| PFAM:PF07521 | PFAM:PF10996 | PFAM:PF16661 | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF37 | InterPro:RMMBL |
| InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 | SUPFAM:SSF56281 | UniParc:UPI0002969677 | : |
Description
Cleavage and polyadenylation specificity factor subunit 3-II [Source:GMGC_GENE;Acc:GSMUA_Achr3G07540_001]
Coordinates
chr3:-:5189563..5212700
Molecular Weight (calculated)
75005.6 Da
IEP (calculated)
6.969
GRAVY (calculated)
-0.171
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDCGMHMGY LDSRRFPDFS LISKTGDFDS ALTCVVITHF HLDHVGALPY FTEVCGYHGP IYMTYPTKAL APLMLEDYRK VMVDRRGEEE QFTYDHIMDC
101: MKKVLWHHHS LQDTTLHKSL IDVQCSPLCE PYMRLLHEFF HAVTPLDLKQ TVQVDKDLEI RAYYAGHVLG AAMIYAKVGE NTIVYTGDYN MTPDRHLGAA
201: HIDRLQLDLL VTESTYATTI RDSKYARERE FLRAVHKCVA GGGKVLIPTF ALGRAQELCI LLDDYWERMN LKVPIYFSAG LTIQANMYYK MLIGWTSQKI
301: KDTSSVRNTF DFKHVCPFDR SLINAPGPCV LFATPGMISG GFSLEVFKQW APSELNLVTL PGYCVAGTIG HKLMSGKPTK IDLDKDTYVD VRCQIHQLSF
401: SPHTDAKGIM DLIEYLSPKH VILVHGERPK MALLKERIQS ELGIQCYYPA NNEKLLISTT QHVKIDVTKK FIRSCSSAML SNDTTAEGIL LMEKTKTAKL
501: IHESELLRTL GVIEHQVRFA FCCPVEVTRT EHLSDEANTT HCHESSITRV DVPRYIQIAS DSLQLHTFHV CVCSNEHCSY RKKENGVGES VVYFCCSWSP
601: CDDRLARELL QIMGHLSVPL SLDNNLIKMT SQEYEKLSSH TYRSVAYQNM KHEQLQLSS
101: MKKVLWHHHS LQDTTLHKSL IDVQCSPLCE PYMRLLHEFF HAVTPLDLKQ TVQVDKDLEI RAYYAGHVLG AAMIYAKVGE NTIVYTGDYN MTPDRHLGAA
201: HIDRLQLDLL VTESTYATTI RDSKYARERE FLRAVHKCVA GGGKVLIPTF ALGRAQELCI LLDDYWERMN LKVPIYFSAG LTIQANMYYK MLIGWTSQKI
301: KDTSSVRNTF DFKHVCPFDR SLINAPGPCV LFATPGMISG GFSLEVFKQW APSELNLVTL PGYCVAGTIG HKLMSGKPTK IDLDKDTYVD VRCQIHQLSF
401: SPHTDAKGIM DLIEYLSPKH VILVHGERPK MALLKERIQS ELGIQCYYPA NNEKLLISTT QHVKIDVTKK FIRSCSSAML SNDTTAEGIL LMEKTKTAKL
501: IHESELLRTL GVIEHQVRFA FCCPVEVTRT EHLSDEANTT HCHESSITRV DVPRYIQIAS DSLQLHTFHV CVCSNEHCSY RKKENGVGES VVYFCCSWSP
601: CDDRLARELL QIMGHLSVPL SLDNNLIKMT SQEYEKLSSH TYRSVAYQNM KHEQLQLSS
001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH
Arabidopsis Description
CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.