Factsheet for Os09t0397900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0313300-01
Os06t0677700-00
Os07t0688500-00
Os09t0569400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	Os06t0677700-00	AT1G30460.1	16897494
AT2G01730.1	Os03t0313300-01	AT3G06560.1	16897494
AT2G01730.1	Os07t0688500-00	AT3G06560.1	16897494
AT2G01730.1	Os09t0569400-01	AT5G23880.1	16897494
AT2G01730.1	Os09t0569400-01	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G060590.1	Barley	cytosol	34.35	96.97
TraesCS5B01G202500.1	Wheat	cytosol	67.62	82.35
TraesCS5A01G203800.1	Wheat	cytosol	80.86	81.88
TraesCS5D01G210400.1	Wheat	cytosol	80.32	81.34
HORVU5Hr1G060570.5	Barley	cytosol	80.68	80.68
Zm00001d044213_P001	Maize	cytosol	71.91	72.04
EES01080	Sorghum	cytosol	69.77	69.89
VIT_01s0011g05780.t01	Wine grape	cytosol	11.63	69.15
KRH70353	Soybean	cytosol	62.08	65.23
Solyc04g008030.1.1	Tomato	cytosol	63.86	55.01
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	57.96	52.85
Bra026637.1-P	Field mustard	cytosol	57.96	52.68
CDY66642	Canola	cytosol	57.96	52.68
CDY09421	Canola	cytosol	57.96	52.68
GSMUA_Achr3P07540_001	Banana	cytosol	60.82	51.59
PGSC0003DMT400075788	Potato	extracellular	20.21	32.1
Os03t0852900-01	Rice	plastid	32.92	26.29
Os09t0569400-01	Rice	cytosol	19.14	14.5

Protein Annotations

MapMan:16.2.1.2.4	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	EntrezGene:4346985	ProteinID:BAD28786.1	ProteinID:BAF25021.1
ProteinID:BAT07944.1	InterPro:Beta_Casp	ProteinID:EEE69654.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043
GO:GO:0030154	InterPro:IPR036866	InterPro:Metallo-B-lactamas	EnsemblPlantsGene:Os09g0397900	EnsemblPlants:Os09t0397900-01	PFAM:PF07521
PFAM:PF10996	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	UniProt:Q6ERD4	InterPro:RMMBL
InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI00003CE7E6	RefSeq:XP_015651426.1

Description

Similar to FEG protein. (Os09t0397900-01)

Coordinates

chr9:+:13891822..13897252

Molecular Weight (calculated)

62704.8 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.190

Length

559 amino acids

Sequence
(BLAST)

001: MAIECLVLGA GQEVGKSCVV VTFGGGKRVM FDCGMHMGHR DSRRYPDFDR LLADGAADYT AAISCVVITH FHLDHIGALP YFTEVCGYHG PVYMTYPTKA
101: LAPLMLEDYR KVMVDHRGEE EQYSYEDILR CMRKVIPLDL KQTIQVDKDL SIRAYYAGHV LGAAMIYAKV GDAAIVYTGD YNMTPDRHLG AAQIDRLKLD
201: LLITESTYAK TVRDSKHARE REFLKAVHKC VSGGGKVLIP AFALGRAQEL CILLDDYWER MNLKIPIYFS AGLTIQANMY YKMLIGWTSQ KIKNSYTVHN
301: PFDFKHVCHF ERSFINNPGP CVLFATPGMI SGGFSLEVFK KWAPSEKNLV TLPGYCVAGT IGHKLMSGKP TRIDIDKDTH IDVRCQIHQL SFSPHTDSKG
401: IMDLTEFLSP SHVILVHGEK PQMAFLKERI ESELGMQCCY PANNETVSIP TSQNLKINAT EKFIVSFCMD ETENDPQKQN LNFGGDMPQG CRTEGVAEGV
501: LLMEKSKTPK ILREDELLHS LGMETHFVHF EPLHPSSIEV KHTGESAVQQ SSLEHLDCE

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.