Factsheet for Os03t0313300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0252200-01
Os06t0677700-00
Os09t0397900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	Os06t0677700-00	AT1G30460.1	16897494
AT3G06560.1	Os06t0677700-00	AT1G30460.1	18479511
AT3G06560.1	Os09t0397900-01	AT2G01730.1	16897494
AT3G06560.1	Os04t0252200-01	AT5G51660.1	16897494

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	68.31	69.07
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	63.55	68.31
TraesCS4A01G123900.1	Wheat	nucleus	64.65	65.37
TraesCS4D01G182000.1	Wheat	nucleus	64.47	65.19
TraesCS4B01G180500.1	Wheat	nucleus	64.1	64.81
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	17.03	64.14
HORVU4Hr1G052840.1	Barley	plastid	62.82	63.28
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	17.4	59.75
OQU92698	Sorghum	cytosol, plasma membrane, plastid	66.12	59.67
Os07t0688500-00	Rice	cytosol	57.14	59.54
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	46.15	45.24
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	41.21	45.09
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	39.01	44.47
AT3G06560.1	Thale cress	nucleus	39.93	43.0
CDY24682	Canola	nucleus	38.28	42.74
Solyc12g099180.1.1	Tomato	cytosol	33.88	42.53
VIT_05s0077g00650.t01	Wine grape	plastid	43.22	41.92
CDY05277	Canola	nucleus	38.46	40.94
Bra029588.1-P	Field mustard	nucleus	38.46	40.86
PGSC0003DMT400011757	Potato	nucleus	39.93	38.93
Os06t0558766-00	Rice	cytosol	15.75	37.07
Os06t0319600-01	Rice	cytosol	6.59	27.91
Os01t0702900-01	Rice	extracellular	6.41	27.13
Os04t0588350-00	Rice	nucleus, plastid	26.74	26.26
Os02t0227400-01	Rice	extracellular	28.39	25.41
Os06t0558700-01	Rice	nucleus	3.48	5.78

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EntrezGene:9272301	EMBL:AK241138
UniProt:B7F8L5	ProteinID:BAS83883.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C
EnsemblPlantsGene:Os03g0313300	EnsemblPlants:Os03t0313300-01	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682
PANTHER:PTHR10682:SF28	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003
SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix	UniParc:UPI000188AFC7	RefSeq:XP_015629071.1	SEG:seg

Description

Poly(A) polymerase, central region domain containing protein. (Os03t0313300-01)

Coordinates

chr3:-:11199350..11205122

Molecular Weight (calculated)

62022.5 Da

IEP (calculated)

8.711

GRAVY (calculated)

-0.117

Length

546 amino acids

Sequence
(BLAST)

001: MSRSSRGGRQ SASSATRMAS RARPGFPVAP PPPMGPPPPP PMPPVPVMYL RGVPPPPPWL PQHLIICGLD PAAAERTDAF RSKSLLNFIS RTGVLPSPEE
101: ELKRQVVVRE LDKIVMGWAK RVAYDQREQY WNTTATVLTF GSYALGAYGP ESDIDAVCVG PCIASLQHHF FIVLRQMLEE RPEVSDLHSI ENAKVPLMRF
201: KFNGMLVDFP YVQLPVINAA EAIHAFDPRL LAAVNEPSWR CLSGVRVNRQ IMQLLPNIKK FQILLRCLKL WARKRGLHCH LLGFFAGIHL AILAAFVCIM
301: HPHATLSSLF NSFFDIFSHW HWPLPVSLLD QPTPWRPHCC SFMPIVMPCS PPEFCASSIT RSTFNKIKEE LQRGFALTKG DRNGDINWTE LFAPFPYTVR
401: YKHFLRIVLS APVAEELRDW VGWVKSRFRN LLLKLESIGV DCDPDPSEQA DHSMIEPNVV FFWGLMYRTS TNICIDSVKE DFMKSVTNDI YGKEKCTHSD
501: ITMSIVWPTH LPKCVYAHSV YSQNRQNPRQ FMMGNQLMNQ DCNAVR

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.