Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52248 | Canola | cytosol, nucleus, plastid | 25.0 | 69.05 |
| CDY65137 | Canola | cytosol, nucleus, plastid | 25.0 | 69.05 |
| Os06t0319600-01 | Rice | cytosol | 25.0 | 44.96 |
| Os01t0702900-01 | Rice | extracellular | 16.38 | 29.46 |
| Os02t0227400-01 | Rice | extracellular | 72.84 | 27.7 |
| Os04t0588350-00 | Rice | nucleus, plastid | 55.6 | 23.2 |
| Os07t0688500-00 | Rice | cytosol | 39.66 | 17.56 |
| Os03t0313300-01 | Rice | mitochondrion | 37.07 | 15.75 |
| Os06t0558700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | UniProt:A0A0P0WXU0 | ProteinID:BAS98238.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004652 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0043631 |
| EnsemblPlantsGene:Os06g0558766 | EnsemblPlants:Os06t0558766-00 | PFAM:PF01909 | PFAM:PF04928 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF29 |
| InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | SUPFAM:SSF81301 | UniParc:UPI000393B596 | SEG:seg |
Description
Similar to predicted protein. (Os06t0558766-00)
Coordinates
chr6:-:21346272..21350292
Molecular Weight (calculated)
25713.7 Da
IEP (calculated)
4.329
GRAVY (calculated)
-0.038
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MAACNAAAAA AVAEQPQKQY GITKPISLAE PAEVDLQKTA ELEKFLVEAG LYESPEESAR REEVLGELDK IVKDWVKQLT SQRGYTDQMV EEANAVLFTF
101: GSYRLGVHGP GADIDTLCVG PSYVNREEDF FIVLHDILAQ TEEVTELQPV PDAHVPVMKF KFHGISIDLL YASVSLLVVP PDLDISQGSV LYDVDEVTVR
201: SLNGCRVADQ ILRLVPNVEN FRTTLRCLKY WA
101: GSYRLGVHGP GADIDTLCVG PSYVNREEDF FIVLHDILAQ TEEVTELQPV PDAHVPVMKF KFHGISIDLL YASVSLLVVP PDLDISQGSV LYDVDEVTVR
201: SLNGCRVADQ ILRLVPNVEN FRTTLRCLKY WA
001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV
Arabidopsis Description
nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.