Factsheet for PGSC0003DMT400074732

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008250
PGSC0003DMT400054373
PGSC0003DMT400075788

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	PGSC0003DMT400054373	AT1G30460.1	16897494
AT3G06560.1	PGSC0003DMT400054373	AT1G30460.1	18479511
AT3G06560.1	PGSC0003DMT400075788	AT2G01730.1	16897494
AT3G06560.1	PGSC0003DMT400008250	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	90.98	94.78
PGSC0003DMT400011757	Potato	nucleus	74.55	66.43
CDY24682	Canola	nucleus	51.9	52.97
VIT_05s0077g00650.t01	Wine grape	plastid	58.52	51.87
CDY05277	Canola	nucleus	53.31	51.85
AT3G06560.1	Thale cress	nucleus	52.1	51.28
Bra029588.1-P	Field mustard	nucleus	52.1	50.58
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	54.11	48.47
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	13.63	46.9
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	14.23	44.65
HORVU0Hr1G029140.2	Barley	cytosol	40.88	44.44
HORVU0Hr1G035930.1	Barley	cytosol	40.88	44.44
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	43.49	43.57
Os07t0688500-00	Rice	cytosol	45.49	43.32
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	43.49	42.72
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	44.89	41.48
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	44.29	41.23
Os03t0313300-01	Rice	mitochondrion	45.09	41.21
TraesCS4A01G123900.1	Wheat	nucleus	44.49	41.11
TraesCS4B01G180500.1	Wheat	nucleus	44.49	41.11
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	43.69	41.05
TraesCS2D01G095000.1	Wheat	cytosol	43.29	40.83
TraesCS4D01G182000.1	Wheat	nucleus	44.09	40.74
HORVU4Hr1G052840.1	Barley	plastid	44.09	40.59
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	44.69	40.4
PGSC0003DMT400042602	Potato	cytosol, nucleus, peroxisome	26.05	38.01
OQU92698	Sorghum	cytosol, plasma membrane, plastid	44.49	36.69
HORVU2Hr1G016100.3	Barley	cytosol	38.68	36.42
PGSC0003DMT400075574	Potato	nucleus	33.67	27.72
PGSC0003DMT400078394	Potato	nucleus	32.46	22.85

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:102595923	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	UniProt:M1CU34	InterPro:NuclTrfase_I-like_C
PFAM:PF01909	PFAM:PF04928	EnsemblPlantsGene:PGSC0003DMG400029059	PGSC:PGSC0003DMG400029059	EnsemblPlants:PGSC0003DMT400074732	PIRSF:PIRSF018425
PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003
SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix	UniParc:UPI000294F9E9	RefSeq:XP_015161885.1	SEG:seg

Description

Poly(A) polymerase [Source:PGSC_GENE;Acc:PGSC0003DMG400029059]

Coordinates

chr1:+:37680220..37685394

Molecular Weight (calculated)

57108.6 Da

IEP (calculated)

8.106

GRAVY (calculated)

-0.024

Length

499 amino acids

Sequence
(BLAST)

001: MEFGHIERQQ LVDPRHVNTY LPRWSIGLRP NSNLDYQVGH FTPLPPLDGV LGFGGNPDGI LRMEMERSMS LFQIMGDEGL VPSLEEEMKR RNAIHKLKKI
101: VREWVQTVAY HHALPKRYLR FASGTILTYG SYGLGVHNSE SDIDALCVGP CFATIEEDFF IVLRNILASR PEVSDIHCVK GAKVPLMRFK FDGISIDLPY
201: ARLKVISIPE DVDVFNPFFL KNIDDKSWKS LSGVRANRRI LQLVPNVEIF QAVLRCVKLW AKKRGVYGNL LGFFGGVHLA VLSAFICQRH PTASLSALFF
301: IFFKTFAFWP WPTPVVLQDG VAWPFIPTDK VLWMPIQLPC SPYQFCHSNI VRSTFFKIKS EFMRGHMLTK DMLRPEFDWN ILFEPFPYPR KYEKFVKIFL
401: SASDKDELGD WVGCVKSRFR CLIIKLEELL GFCDPNPTEY ADVDASEPNA VFYWGLPPAM TDMINIGHVE VEFLKSTNNV YQGPTGKLKL SIVQADQLP

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.