Factsheet for Zm00001d022535_P004

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004153_P002
Zm00001d004154_P002
Zm00001d013380_P001
Zm00001d014378_P001
Zm00001d014379_P001
Zm00001d033843_P007
Zm00001d036594_P001
Zm00001d036595_P001
Zm00001d044213_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	Zm00001d014378_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d014379_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d036594_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d036595_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d014378_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d014379_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d036594_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d036595_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d044213_P001	AT2G01730.1	16897494
AT3G06560.1	Zm00001d004153_P002	AT5G51660.1	16897494
AT3G06560.1	Zm00001d004154_P002	AT5G51660.1	16897494
AT3G06560.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT3G06560.1	Zm00001d033843_P007	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	88.25	85.69
HORVU0Hr1G029140.2	Barley	cytosol	57.46	67.1
HORVU0Hr1G035930.1	Barley	cytosol	57.46	67.1
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	61.01	65.66
Os07t0688500-00	Rice	cytosol	62.31	63.74
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	62.69	63.28
TraesCS2D01G095000.1	Wheat	cytosol	61.19	62.0
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	52.8	55.71
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	14.93	55.17
HORVU2Hr1G016100.3	Barley	cytosol	54.48	55.09
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	54.85	54.44
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	15.11	50.94
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	41.23	44.29
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	38.99	43.63
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	45.15	43.45
CDY24682	Canola	nucleus	38.81	42.54
Solyc12g099180.1.1	Tomato	cytosol	34.51	42.53
VIT_05s0077g00650.t01	Wine grape	plastid	43.66	41.56
CDY05277	Canola	nucleus	39.37	41.13
AT3G06560.1	Thale cress	nucleus	38.81	41.03
Bra029588.1-P	Field mustard	nucleus	38.99	40.66
PGSC0003DMT400011757	Potato	nucleus	40.49	38.75
Zm00001d031424_P001	Maize	cytosol	9.89	30.99
Zm00001d044377_P001	Maize	cytosol	8.77	30.32
Zm00001d040140_P001	Maize	cytosol	10.07	29.83
Zm00001d016073_P001	Maize	cytosol	10.07	28.42
Zm00001d002505_P001	Maize	nucleus	27.43	26.63
Zm00001d053559_P007	Maize	mitochondrion	28.92	22.63
Zm00001d036977_P001	Maize	nucleus	28.36	21.65
Zm00001d013599_P016	Maize	nucleus	26.87	19.2
Zm00001d033448_P004	Maize	nucleus	26.49	19.06
Zm00001d046255_P035	Maize	nucleus	28.36	18.42

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1D6INW1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	InterPro:NuclTrfase_I-like_C	ProteinID:ONM60950.1	PFAM:PF01909	PFAM:PF04928	PANTHER:PTHR10682
PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI0004DEA59A	EnsemblPlantsGene:Zm00001d022535	EnsemblPlants:Zm00001d022535_P004	EnsemblPlants:Zm00001d022535_T004	SEG:seg

Description

Nuclear poly(A) polymerase 3

Coordinates

chr7:-:179627121..179632813

Molecular Weight (calculated)

60176.1 Da

IEP (calculated)

7.717

GRAVY (calculated)

-0.012

Length

536 amino acids

Sequence
(BLAST)

001: MAYMTAVAPV PWWPPPPELA HAGLLVASSP AGYPEPQTLP FLFAPLPPPP PAGCPLLPPP APIVIQLQPH PSLLAEVDHR RSSSLVQFLK DEGAVLSPED
101: ENKREKVIRE LKKIVMHWAN AVAYEQSVPQ GLATATVLTY GSYTLGAHGP ESDIDLLCLG PCIATLQYHF FVVLRQILQG RPEVSEVHTV EKAKVPLMRF
201: RFTGIAVDLT YAQLPVIDAL KAINTFSPQL LQKIDTRSWR SLSGVRVNEQ IVQLVPNAEK FQTLLRCIKL WARKRGLHCH YLGFFAGIHL AILAAYVCRK
301: FPDASVSGLF AVFFQTFAHW PWQVPVSLHD ELTTCLHSEG RLMPIVMPCT PPEFCASTVT KGSLKKIREE LTRGYVLTRD PLRHDFQWSW LFEPFPYDQK
401: YQQFLRIALR APTIAELGDW AGWVKSRFRF LILKLERAGI ECDPCPSEEV DHTDNDPNVV FYWGLIPKRI IQVDTSSLKG DFMEDLTNDV YGTVKCTHSD
501: VTISVVGLPQ LPKSMCSRVY PPAVHAALYD GLRGHR

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.