Factsheet for Zm00001d040140_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044377_P001	Maize	cytosol	82.32	96.13
Zm00001d031424_P001	Maize	cytosol	90.61	95.91
Zm00001d016073_P001	Maize	cytosol	91.16	86.84
Os06t0319600-01	Rice	cytosol	43.09	60.47
Zm00001d033448_P004	Maize	nucleus	94.48	22.95
Zm00001d013599_P016	Maize	nucleus	90.61	21.87
EER93704	Sorghum	cytosol	90.61	21.87
TraesCS4A01G246800.1	Wheat	nucleus	79.01	19.64
TraesCS4B01G068100.1	Wheat	nucleus	79.01	19.62
TraesCS4D01G067100.1	Wheat	nucleus	79.01	19.62
HORVU4Hr1G011370.8	Barley	nucleus	79.56	19.05
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	62.43	17.36
CDY17685	Canola	nucleus	61.33	16.42
GSMUA_AchrUn_...	Banana	nucleus	66.85	16.29
Bra024894.1-P	Field mustard	nucleus	60.22	16.22
VIT_01s0011g04320.t01	Wine grape	nucleus	64.09	16.2
Bra016573.1-P	Field mustard	nucleus	61.88	16.18
Solyc05g008630.2.1	Tomato	nucleus	60.77	16.13
CDY21725	Canola	nucleus	62.98	16.03
CDX81855	Canola	nucleus	62.43	15.92
AT1G17980.1	Thale cress	nucleus	62.43	15.85
CDX83877	Canola	nucleus	61.88	15.73
CDX77811	Canola	nucleus	60.22	15.73
CDX96740	Canola	nucleus	61.88	15.71
PGSC0003DMT400078394	Potato	nucleus	60.77	15.51
KRH39125	Soybean	nucleus	63.54	15.19
KRH48590	Soybean	nucleus	62.98	15.06
Zm00001d053559_P007	Maize	mitochondrion	53.59	14.16
Zm00001d036977_P001	Maize	nucleus	54.7	14.1
Bra031010.1-P	Field mustard	nucleus	52.49	13.79
KRH60473	Soybean	cytosol	45.3	13.76
Zm00001d002505_P001	Maize	nucleus	40.88	13.41
Zm00001d046255_P035	Maize	nucleus	54.14	11.88
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	29.83	10.63
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	31.49	10.56
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	29.83	10.07
CDY58017	Canola	cytosol, nucleus, plasma membrane	16.02	9.86
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	3.31	4.14
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	3.31	3.77

Protein Annotations

MapMan:16.2.1.1.1	Gene3D:3.30.460.10	UniProt:A0A1D6MNC4	GO:GO:0003674	GO:GO:0003824	GO:GO:0004652
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0043631	ProteinID:ONM30622.1
PFAM:PF01909	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301	UniParc:UPI0008DB3457	EnsemblPlantsGene:Zm00001d040140	EnsemblPlants:Zm00001d040140_P001	EnsemblPlants:Zm00001d040140_T001

Description

Nuclear poly(A) polymerase 1

Coordinates

chr3:-:29053844..29055169

Molecular Weight (calculated)

20202.1 Da

IEP (calculated)

6.079

GRAVY (calculated)

-0.190

Length

181 amino acids

Sequence
(BLAST)

001: MSKVKNNNGY HGVTEPISLS GPTEKYLMQT VEVEKYLSDA RLYERQDEAI LREEVLGKLD QTVKAWIKKA TRISGYGEQF VHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATQNEY FFRWLHDILA EMPEVSELHP VPDAHVPVLG FKINGVSIDL VYANLAHAAI PEVSLSYCTA V

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.