CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17685	Canola	nucleus	90.48	92.75
CDY58017	Canola	cytosol, nucleus, plasma membrane	38.1	89.8
CDX81855	Canola	nucleus	75.9	74.08
CDY21725	Canola	nucleus	75.76	73.84
CDX83877	Canola	nucleus	75.32	73.31
CDX96740	Canola	nucleus	75.32	73.21
AT1G17980.1	Thale cress	nucleus	73.45	71.39
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	57.86	61.6
Zm00001d031424_P001	Maize	cytosol	15.15	61.4
Zm00001d040140_P001	Maize	cytosol	15.73	60.22
Zm00001d044377_P001	Maize	cytosol	13.42	60.0
CDY52248	Canola	cytosol, nucleus, plastid	6.93	57.14
CDY65137	Canola	cytosol, nucleus, plastid	6.93	57.14
Os06t0319600-01	Rice	cytosol	10.53	56.59
Zm00001d016073_P001	Maize	cytosol	15.44	56.32
KRH39125	Soybean	nucleus	60.61	55.48
KRH48590	Soybean	nucleus	59.31	54.29
Solyc05g008630.2.1	Tomato	nucleus	52.96	53.81
GSMUA_AchrUn_...	Banana	nucleus	57.0	53.16
PGSC0003DMT400078394	Potato	nucleus	52.81	51.62
KRH60473	Soybean	cytosol	43.87	51.01
CDY69371	Canola	cytosol	6.06	50.0
TraesCS4A01G246800.1	Wheat	nucleus	50.22	47.8
TraesCS4D01G067100.1	Wheat	nucleus	50.22	47.74
TraesCS4B01G068100.1	Wheat	nucleus	50.07	47.6
Zm00001d033448_P004	Maize	nucleus	49.49	46.04
HORVU4Hr1G011370.8	Barley	nucleus	50.22	46.03
Zm00001d013599_P016	Maize	nucleus	49.64	45.87
EER93704	Sorghum	cytosol	49.35	45.6
CDX68897	Canola	nucleus	46.32	44.28
CDX75292	Canola	nucleus	46.32	44.03
CDX77017	Canola	nucleus	46.32	42.74
CDY35331	Canola	nucleus	46.18	41.99
CDY24682	Canola	nucleus	22.51	31.9
CDY05277	Canola	nucleus	23.09	31.19

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078CKT4	EnsemblPlants:CDX77811
ProteinID:CDX77811	ProteinID:CDX77811.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00128858001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI0004EE2D36	SEG:seg	:	:	:	:

Description

BnaC07g20650D

Coordinates

chrLK031812:-:1987855..1989936

Molecular Weight (calculated)

78174.2 Da

IEP (calculated)

7.806

GRAVY (calculated)

-0.422

Length

693 amino acids

Sequence
(BLAST)

001: MNKVQSMASV QHNRQIRYGI TEPISLGGPT ELDVIKTKAL ENYLQDAGLY ESNEEALRRE EVLGRLDEIV KTWIKKISRD KGLSDETVEQ ANAKIFTFGS
101: YRLKVHGPGA DIDTLCVGPR YATRGNGFFG ELHRMLSELP EVTELHSVPD AYVPLMGFKL NGVSIDLLYA KLPLWIIPED LDLSDDSILQ NADEQTVRSL
201: NGCRVTDKIF RLVPNIQSFR TTLRCIRFWA KKRGVYSNVS GFLGGINWAL LVARICQLYP KASPNMLVSR FFRVYTQWRW PNPILLCSID EEGCSSLGLQ
301: VWDPRRNPKD LLHKMPIITP AYPCMNSSYN VSASTLRIMT GEFQRGKDIC AAMEGNEADQ WDTLFEPFGF FEAYKNYLQI NISASNVEDL KKWRGWVESR
401: FRQLTLVIER HTCDMLQCHP HPHGFQDDSR PLQCALFMGL QRKQGVTAVG GEPFDIRRTI EEFKQTVYGY TLWSPRMEIN VSHVMRRSIP SFVFPGGVRP
501: LRNSKGTWDS KRSSEQRVSS TGSSSSTITS CESKGGKKRK LGDDETFTDQ LRNSKRVAVS VHVENGEDGS PNSSVESICS APMKELCTKV EYDPISKDVG
601: ETHPVGKIAT PQASLSQESE EVEDNFGFRN QVVKQIPSKD AFSKGAVEVE ELEDVPTQQP VVTHKASVQL QKPIIKLNFT SLSTINAKNL RAY

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.