Factsheet for Solyc05g008630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078394	Potato	nucleus	90.76	87.31
CDY58017	Canola	cytosol, nucleus, plasma membrane	27.71	64.29
Zm00001d031424_P001	Maize	cytosol	15.69	62.57
Solyc06g066470.2.1	Tomato	nucleus	42.23	60.89
Zm00001d040140_P001	Maize	cytosol	16.13	60.77
Zm00001d044377_P001	Maize	cytosol	13.64	60.0
Zm00001d016073_P001	Maize	cytosol	16.28	58.42
VIT_01s0011g04320.t01	Wine grape	nucleus	61.0	58.1
Os06t0319600-01	Rice	cytosol	10.85	57.36
CDX81855	Canola	nucleus	57.92	55.63
CDY21725	Canola	nucleus	57.92	55.56
KRH39125	Soybean	nucleus	61.58	55.48
CDX96740	Canola	nucleus	57.77	55.26
AT1G17980.1	Thale cress	nucleus	57.62	55.12
CDX83877	Canola	nucleus	57.18	54.78
Bra031010.1-P	Field mustard	nucleus	55.13	54.57
Bra016573.1-P	Field mustard	nucleus	55.13	54.34
KRH48590	Soybean	nucleus	59.82	53.9
Bra024894.1-P	Field mustard	nucleus	53.08	53.87
GSMUA_AchrUn_...	Banana	nucleus	58.5	53.7
CDY17685	Canola	nucleus	53.08	53.55
Solyc12g095890.1.1	Tomato	nucleus	47.36	53.21
CDX77811	Canola	nucleus	53.81	52.96
TraesCS4B01G068100.1	Wheat	nucleus	54.25	50.75
TraesCS4A01G246800.1	Wheat	nucleus	54.11	50.69
TraesCS4D01G067100.1	Wheat	nucleus	53.81	50.34
HORVU4Hr1G011370.8	Barley	nucleus	54.55	49.21
KRH60473	Soybean	cytosol	42.23	48.32
Zm00001d033448_P004	Maize	nucleus	52.35	47.92
EER93704	Sorghum	cytosol	52.35	47.6
Zm00001d013599_P016	Maize	nucleus	51.91	47.2
Solyc08g066200.2.1	Tomato	nucleus	50.0	43.33
Solyc12g099180.1.1	Tomato	cytosol	21.7	34.02
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	22.14	31.52

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	UniProt:K4BX37	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	EnsemblPlantsGene:Solyc05g008630.2
EnsemblPlants:Solyc05g008630.2.1	UniParc:UPI00027664AD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:2934132..2942578

Molecular Weight (calculated)

76292.3 Da

IEP (calculated)

6.087

GRAVY (calculated)

-0.403

Length

682 amino acids

Sequence
(BLAST)

001: MSNTGYGISE PISTGGPSEL DVVRNRELEK FLADAGLYES HEEAIKREEV LGRLDQIVKT WVKNVCRAKG FNDDLVHEAN AKIFTFGSYR LGVHGPGADI
101: DTLCVGPRHA MREDFFGELH RMLEEMPEIQ ELHPVPDARV PVMKFKLNGV SIDLLYANVA LWVIPEDLDV SQESILQNVD DQTVRSLNGC RVTDQVLHLV
201: PNIQSFRTAL RCMRLWAKRR GVYSNVTGFL GGINWALLVA RICQLYPNAA PSMLVSRFFR VYSLWRWPNP VLLCPINEGS LGLAYWDPRR NFKDRQHLMP
301: IITPAYPCMN SSYNVSTSTL RVMMEEFLRG NEICEAIEAN KASWGSLFEP FPFFEAYKNY LRIDIATESD DDMRQWKGWV ESRIRLLTLK IERDTVGVLQ
401: CHPHPGEFSD KSKPFHHSYF MGLRKKEGAS YQQGEQFDIR STVEDFKRDV YAYSFWKSSM WINVCHVRRK DLPDFVFPGG VRPAQPAKSE SRSGSRSLGS
501: AKTTSPDAAS SRKRKHDEVV AGLSPKGSDA SSPGEIRELK HFEADTGDTS STLPVAASGA AVTELTVMQS AKLTVGQQSE PHGVEDLGYD LELTNGAKHF
601: DGANGLQTEP PTPEQFVGAA TSEEKDRIGG SSNNVLQSEG LEELEPIEPA PSSSIASAAF EVPQKPLIRF NFTSLRKTTE ST

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.