Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81855 | Canola | nucleus | 87.1 | 87.46 |
| CDY21725 | Canola | nucleus | 86.96 | 87.2 |
| Bra031010.1-P | Field mustard | nucleus | 84.01 | 86.94 |
| CDX96740 | Canola | nucleus | 85.13 | 85.13 |
| Bra016573.1-P | Field mustard | nucleus | 82.19 | 84.68 |
| CDX83877 | Canola | nucleus | 84.43 | 84.55 |
| CDY58017 | Canola | cytosol, nucleus, plasma membrane | 32.12 | 77.89 |
| CDX77811 | Canola | nucleus | 71.39 | 73.45 |
| CDY17685 | Canola | nucleus | 69.0 | 72.78 |
| Bra024894.1-P | Field mustard | nucleus | 68.58 | 72.77 |
| VIT_17s0000g03120.t01 | Wine grape | cytosol, nucleus, plastid | 60.87 | 66.67 |
| Zm00001d031424_P001 | Maize | cytosol | 15.43 | 64.33 |
| Zm00001d044377_P001 | Maize | cytosol | 13.74 | 63.23 |
| Zm00001d040140_P001 | Maize | cytosol | 15.85 | 62.43 |
| KRH39125 | Soybean | nucleus | 63.81 | 60.11 |
| Zm00001d016073_P001 | Maize | cytosol | 15.85 | 59.47 |
| Os06t0319600-01 | Rice | cytosol | 10.66 | 58.91 |
| KRH48590 | Soybean | nucleus | 62.41 | 58.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.31 | 57.87 |
| Solyc05g008630.2.1 | Tomato | nucleus | 55.12 | 57.62 |
| KRH60473 | Soybean | cytosol | 46.7 | 55.87 |
| PGSC0003DMT400078394 | Potato | nucleus | 54.98 | 55.29 |
| TraesCS4A01G246800.1 | Wheat | nucleus | 52.45 | 51.37 |
| TraesCS4D01G067100.1 | Wheat | nucleus | 52.45 | 51.3 |
| TraesCS4B01G068100.1 | Wheat | nucleus | 52.31 | 51.17 |
| HORVU4Hr1G011370.8 | Barley | nucleus | 52.45 | 49.47 |
| Zm00001d033448_P004 | Maize | nucleus | 51.19 | 48.99 |
| Zm00001d013599_P016 | Maize | nucleus | 51.33 | 48.8 |
| EER93704 | Sorghum | cytosol | 51.05 | 48.53 |
| AT4G32850.8 | Thale cress | nucleus | 45.86 | 42.75 |
| AT2G25850.2 | Thale cress | nucleus | 46.56 | 41.5 |
| AT3G06560.1 | Thale cress | nucleus | 22.16 | 31.16 |
Protein Annotations
| Gene3D:1.10.1410.10 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | EntrezGene:838378 | UniProt:A0A178W197 |
| ProteinID:AAF97277.1 | ProteinID:AEE29658.1 | ProteinID:AEE29659.1 | EMBL:AK227446 | ArrayExpress:AT1G17980 | EnsemblPlantsGene:AT1G17980 |
| RefSeq:AT1G17980 | TAIR:AT1G17980 | RefSeq:AT1G17980-TAIR-G | EnsemblPlants:AT1G17980.1 | TAIR:AT1G17980.1 | EMBL:AY323906 |
| Unigene:At.26787 | EMBL:BT005990 | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006378 |
| GO:GO:0006397 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008285 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| GO:GO:0031123 | GO:GO:0043631 | GO:GO:0045824 | GO:GO:0046872 | GO:GO:0048366 | GO:GO:0048451 |
| RefSeq:NP_173240.2 | RefSeq:NP_973855.1 | InterPro:NuclTrfase_I-like_C | ProteinID:OAP11854.1 | Symbol:PAPS1 | PFAM:PF01909 |
| PFAM:PF04926 | PFAM:PF04928 | PIRSF:PIRSF018425 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003011 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020031 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10682 |
| PANTHER:PTHR10682:SF22 | InterPro:PolA_pol_RNA-bd_dom | InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | UniProt:Q9LMT2 |
| SUPFAM:SSF55003 | SUPFAM:SSF81301 | SUPFAM:SSF81631 | UniParc:UPI0000060DEA | SEG:seg | : |
Description
PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
Coordinates
chr1:-:6187465..6191708
Molecular Weight (calculated)
80188.2 Da
IEP (calculated)
6.708
GRAVY (calculated)
-0.466
Length
713 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.