Factsheet for AT2G25850.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77017	Canola	nucleus	78.12	83.22
CDY35331	Canola	nucleus	78.5	82.41
Bra034276.1-P	Field mustard	cytosol	77.38	80.29
AT4G32850.8	Thale cress	nucleus	70.12	73.33
PGSC0003DMT400075574	Potato	nucleus	50.88	67.16
Solyc12g095890.1.1	Tomato	nucleus	50.88	67.05
KRH62113	Soybean	nucleus	55.25	60.71
GSMUA_Achr10P...	Banana	nucleus	52.62	60.58
KRH52804	Soybean	nucleus	54.88	59.97
OQU76574	Sorghum	nucleus	51.5	59.28
Zm00001d036977_P001	Maize	nucleus	52.0	59.26
GSMUA_Achr6P14860_001	Banana	nucleus	49.62	58.9
Os02t0227400-01	Rice	extracellular	44.88	58.85
TraesCS7B01G270600.4	Wheat	nucleus	52.0	57.38
TraesCS7D01G365600.4	Wheat	nucleus	52.0	57.3
HORVU7Hr1G088370.13	Barley	nucleus	51.75	57.02
TraesCS7A01G357100.1	Wheat	nucleus	51.88	56.85
Solyc08g066200.2.1	Tomato	nucleus	55.25	56.16
VIT_11s0016g03040.t01	Wine grape	nucleus	41.88	56.02
Zm00001d053559_P007	Maize	mitochondrion	47.12	55.04
KXG29853	Sorghum	mitochondrion	47.25	54.15
GSMUA_Achr9P16270_001	Banana	nucleus	53.0	53.0
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	44.62	52.27
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	45.25	51.64
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	44.12	50.57
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	43.75	49.93
Zm00001d046255_P035	Maize	nucleus	50.62	49.09
AT1G17980.1	Thale cress	nucleus	41.5	46.56
AT3G06560.1	Thale cress	nucleus	21.38	33.73

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EntrezGene:817127	UniProt:A0A178VXR1
ProteinID:AAC42245.2	ProteinID:AEC07761.1	ProteinID:AEC07762.1	ProteinID:AEC07763.1	ProteinID:AEC07764.1	EMBL:AF255297
ArrayExpress:AT2G25850	EnsemblPlantsGene:AT2G25850	RefSeq:AT2G25850	TAIR:AT2G25850	RefSeq:AT2G25850-TAIR-G	EnsemblPlants:AT2G25850.2
TAIR:AT2G25850.2	EMBL:AY039974	EMBL:AY074533	Unigene:At.14867	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006378	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	RefSeq:NP_001031417.1
RefSeq:NP_001189603.1	RefSeq:NP_565611.1	RefSeq:NP_850071.1	InterPro:NuclTrfase_I-like_C	UniProt:O82312	ProteinID:OAP09622.1
Symbol:PAPS2	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000009CFDC
SEG:seg	:	:	:	:	:

Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]

Coordinates

chr2:-:11025345..11030808

Molecular Weight (calculated)

90972.8 Da

IEP (calculated)

5.388

GRAVY (calculated)

-0.447

Length

800 amino acids

Sequence
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGARSES LQNEMMRHVF LQPIIGLCKS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.