Factsheet for TraesCS6D01G174400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	96.43	96.85
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	96.15	96.15
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	92.44	94.88
Os02t0227400-01	Rice	extracellular	67.47	77.54
KXG29853	Sorghum	mitochondrion	73.04	73.35
Zm00001d053559_P007	Maize	mitochondrion	71.47	73.14
Bra011388.1-P	Field mustard	nucleus	36.95	61.96
Solyc12g095890.1.1	Tomato	nucleus	51.64	59.64
PGSC0003DMT400075574	Potato	nucleus	51.5	59.57
GSMUA_Achr10P...	Banana	nucleus	55.92	56.4
TraesCS7D01G365600.4	Wheat	nucleus	58.06	56.06
GSMUA_Achr6P14860_001	Banana	nucleus	52.64	54.75
TraesCS2D01G319900.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	34.52	53.66
TraesCS2D01G320700.1	Wheat	nucleus	40.37	53.2
VIT_11s0016g03040.t01	Wine grape	nucleus	45.22	53.01
KRH62113	Soybean	nucleus	53.78	51.79
KRH52804	Soybean	nucleus	53.35	51.09
CDX68897	Canola	nucleus	52.5	50.76
CDX75292	Canola	nucleus	52.5	50.48
TraesCS2D01G451500.1	Wheat	nucleus	38.94	49.82
CDX77017	Canola	nucleus	51.78	48.34
CDY35331	Canola	nucleus	52.21	48.03
AT4G32850.8	Thale cress	nucleus	52.07	47.71
Solyc08g066200.2.1	Tomato	nucleus	53.49	47.65
Bra034276.1-P	Field mustard	cytosol	52.21	47.47
GSMUA_Achr9P16270_001	Banana	nucleus	53.49	46.88
AT2G25850.2	Thale cress	nucleus	51.64	45.25
TraesCS3D01G006700.1	Wheat	cytosol	25.39	41.78
TraesCS4D01G067100.1	Wheat	nucleus	42.51	40.88
TraesCS2D01G095000.1	Wheat	cytosol	21.97	29.11
TraesCS4D01G182000.1	Wheat	nucleus	21.97	28.52

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF27	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	EnsemblPlantsGene:TraesCS6D01G174400
EnsemblPlants:TraesCS6D01G174400.1	TIGR:cd05402	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:163830613..163836884

Molecular Weight (calculated)

78127.2 Da

IEP (calculated)

5.420

GRAVY (calculated)

-0.261

Length

701 amino acids

Sequence
(BLAST)

001: MAGSVGTGRV APRSSPKRYN GMDPPLSLTR PTMFDLQKTA ELEKFLVEAG LYESEEQSAK REEVLREIDG IVKEWVKQLT SQKGYSEQMI EKANVVLFTF
101: GSYRLGVHGP GADIDILCVG PSYVNREEDF FVTLHGILTQ LEEVTELQPV PDAHVPLMKF KFHGMAIDLL YASVSLAVIP PXFNISEGSV LCGVDESTVR
201: SLNGCRVADQ ILRLVPNVEN FRTTLRCLKY WAERRGVYSN VTGFLGGVNW AILVALICQL YPNAVPSMLV SRFFRVFTQW QWPNPVMLCA IENDDLGFSV
301: WDPRKNPRDR SHVMPIITPG YPCMNSSYNV SSSTLRVIKE QFKLGNKICQ EIDLNKASWT ALFEPFNFFE AYTKYLVVDI VADNDDDLRL WKGWVESRLR
401: QLTLKIERDT NGMLQCHPYP CDYSNPTLQC AHCSFYMGLS RKEGMKIHGQ NFDIRGTVDE FMHEIGMYTL WKSGMDLAVT HVRKKQIPYY VFEQGYKKPC
501: PPMHANQQEQ SDRHDTEDDT LTASMLGQLK RKRDFDGAGH SESCKSVKRS SVSLAYEESP PEYGSIVSKV VSENTVNLVS SALCNGVQNG LSHGDVNLES
601: ANCSSSPHGS EESAASGTSC AAVETVHMVV ETVGPESSMA CVINGTVQTM AVHTPLKCVA EKDEPKFEGI GSLANSNSAE FMEQTEMLTG NVLGENMHLC
701: E

Best Arabidopsis Sequence Match ( AT4G32850.2 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.