Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G319900.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 30.99 | 29.27 |
| TraesCS2D01G320700.1 | Wheat | nucleus | 36.15 | 28.95 |
| TraesCS2D01G451500.1 | Wheat | nucleus | 35.45 | 27.55 |
| TraesCS6D01G174400.1 | Wheat | cytosol, mitochondrion | 41.78 | 25.39 |
| TraesCS7D01G365600.4 | Wheat | nucleus | 42.25 | 24.79 |
| TraesCS4D01G067100.1 | Wheat | nucleus | 39.2 | 22.91 |
| TraesCS4D01G182000.1 | Wheat | nucleus | 27.46 | 21.67 |
| TraesCS2D01G095000.1 | Wheat | cytosol | 26.29 | 21.17 |
Protein Annotations
| Gene3D:1.10.1410.10 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | GO:GO:0031123 | GO:GO:0043631 | InterPro:NuclTrfase_I-like_C | PFAM:PF04928 |
| PANTHER:PTHR10682 | InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | SUPFAM:SSF55003 | SUPFAM:SSF81301 | SUPFAM:SSF81631 |
| EnsemblPlantsGene:TraesCS3D01G006700 | EnsemblPlants:TraesCS3D01G006700.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:2370310..2379035
Molecular Weight (calculated)
48993.2 Da
IEP (calculated)
7.306
GRAVY (calculated)
-0.075
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGSSRPEN FGVTKPRSYA YPTEPEIHNT CNLLEVLDQH HPCKSAEERF LQSSALDKLN KIVQDWVKEL TPRGIKEVNA IFFAFGSYFL QVDEFADPID
101: TICIGPSFVD HEHGFFKIFH DKMCQMNEVT RLKSVRNTNV PFMEFKLDGV PIKIVYASLP YSVIPFNFDL HQANVLSMDD VSRNSFDACR VTNEIYRLVP
201: CNKTFTIALR TVKIWAKSRG LLSNVIGFLG DCDWAILVGR ICQAHPFATL STIVFEFFSI FSVWFWPNPV MLVDPRSDPH RLPVWDPHTN RNDIMPIISP
301: VFPCKNIRAD ASASTLRDMI YHFKCGYEQC KLIKVNNNWR DLFMPYKFFE EYIRYVHIDL TADTEQKLEL WKKIGESELL VLISKIEAGR GQLICHICPT
401: EHLSSDSCSF FIGLSTKKLI VGRAIP
101: TICIGPSFVD HEHGFFKIFH DKMCQMNEVT RLKSVRNTNV PFMEFKLDGV PIKIVYASLP YSVIPFNFDL HQANVLSMDD VSRNSFDACR VTNEIYRLVP
201: CNKTFTIALR TVKIWAKSRG LLSNVIGFLG DCDWAILVGR ICQAHPFATL STIVFEFFSI FSVWFWPNPV MLVDPRSDPH RLPVWDPHTN RNDIMPIISP
301: VFPCKNIRAD ASASTLRDMI YHFKCGYEQC KLIKVNNNWR DLFMPYKFFE EYIRYVHIDL TADTEQKLEL WKKIGESELL VLISKIEAGR GQLICHICPT
401: EHLSSDSCSF FIGLSTKKLI VGRAIP
001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV
Arabidopsis Description
nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.