Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G320700.1 | Wheat | nucleus | 95.34 | 80.83 |
| HORVU2Hr1G079870.2 | Barley | nucleus | 93.13 | 77.92 |
| TraesCS2D01G451500.1 | Wheat | nucleus | 76.05 | 62.59 |
| Os01t0702900-01 | Rice | extracellular | 17.07 | 59.69 |
| Os04t0588350-00 | Rice | nucleus, plastid | 71.62 | 58.09 |
| KXG27007 | Sorghum | nucleus | 66.96 | 55.31 |
| Zm00001d002505_P001 | Maize | nucleus | 62.97 | 51.45 |
| TraesCS6D01G174400.1 | Wheat | cytosol, mitochondrion | 53.66 | 34.52 |
| TraesCS7D01G365600.4 | Wheat | nucleus | 55.43 | 34.44 |
| TraesCS3D01G006700.1 | Wheat | cytosol | 29.27 | 30.99 |
| TraesCS4D01G067100.1 | Wheat | nucleus | 47.89 | 29.63 |
| TraesCS2D01G095000.1 | Wheat | cytosol | 27.27 | 23.25 |
| TraesCS4D01G182000.1 | Wheat | nucleus | 27.27 | 22.78 |
Protein Annotations
| Gene3D:1.10.1410.10 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | GO:GO:0031123 | GO:GO:0043631 | InterPro:NuclTrfase_I-like_C | PFAM:PF01909 |
| PFAM:PF04926 | PFAM:PF04928 | PIRSF:PIRSF018425 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF26 | InterPro:PolA_pol_RNA-bd_dom |
| InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | SUPFAM:SSF55003 | SUPFAM:SSF81301 | SUPFAM:SSF81631 |
| EnsemblPlantsGene:TraesCS2D01G319900 | EnsemblPlants:TraesCS2D01G319900.1 | TIGR:cd05402 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2D:+:411344542..411346099
Molecular Weight (calculated)
50912.2 Da
IEP (calculated)
8.461
GRAVY (calculated)
-0.252
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHATALLL PFGSYRLGVH GRRSDIDALV VGPAYVDRHH DFFDVLGCVL AETEAVTELQ LVPGAYVPVI KMRFRGVQVD LLYASVCLDL DLRGRSVLCG
101: LDMATVRSLN GVRVADEILR LVPDAGAFRT KLRCVKHWAK ARGIYSYAMG FVGGVGWAIL VARVCQLYPN AAPSMLVPRF FRIFSQWKWP NPVMLREIEH
201: DDDGGEMPLG LPVWDPRRNP RDGSHLMPVI TPAYPCMNSC YNVSRATLRT MTAEFEAAHK VCQEIAVAGA WDALFRPFNF FKAYKSYLRV DVKVASGEED
301: LREWKGWVES RLRQLVVRVE MATAGMLLCH PHPHAYADDD DRRRVSFFVR LSKPAPSPQQ PQQPPQFDLR LTTQEFKDEV YTYAFWRPGM ELNVSHTRRK
401: DLPPYVLEQI NSTDRLKRKR SDDDSGNPES SPTVKRAAAA GRIGSSSESE T
101: LDMATVRSLN GVRVADEILR LVPDAGAFRT KLRCVKHWAK ARGIYSYAMG FVGGVGWAIL VARVCQLYPN AAPSMLVPRF FRIFSQWKWP NPVMLREIEH
201: DDDGGEMPLG LPVWDPRRNP RDGSHLMPVI TPAYPCMNSC YNVSRATLRT MTAEFEAAHK VCQEIAVAGA WDALFRPFNF FKAYKSYLRV DVKVASGEED
301: LREWKGWVES RLRQLVVRVE MATAGMLLCH PHPHAYADDD DRRRVSFFVR LSKPAPSPQQ PQQPPQFDLR LTTQEFKDEV YTYAFWRPGM ELNVSHTRRK
401: DLPPYVLEQI NSTDRLKRKR SDDDSGNPES SPTVKRAAAA GRIGSSSESE T
001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA
Arabidopsis Description
PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.