CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75292	Canola	nucleus	98.34	97.81
Bra011388.1-P	Field mustard	nucleus	52.0	90.19
AT4G32850.8	Thale cress	nucleus	88.0	83.4
CDY65137	Canola	cytosol, nucleus, plastid	8.83	76.19
CDY52248	Canola	cytosol, nucleus, plastid	8.83	76.19
CDX77017	Canola	nucleus	75.31	72.7
CDY35331	Canola	nucleus	75.72	72.05
PGSC0003DMT400075574	Potato	nucleus	56.55	67.66
Solyc12g095890.1.1	Tomato	nucleus	56.55	67.55
CDY69371	Canola	cytosol	7.59	65.48
GSMUA_Achr10P...	Banana	nucleus	59.45	62.01
KRH62113	Soybean	nucleus	61.66	61.4
Zm00001d036977_P001	Maize	nucleus	59.31	61.25
OQU76574	Sorghum	nucleus	58.48	61.01
GSMUA_Achr6P14860_001	Banana	nucleus	56.69	60.98
Os02t0227400-01	Rice	extracellular	51.17	60.82
KRH52804	Soybean	nucleus	61.24	60.66
CDY58017	Canola	cytosol, nucleus, plasma membrane	24.0	59.18
VIT_11s0016g03040.t01	Wine grape	nucleus	47.86	58.03
TraesCS7B01G270600.4	Wheat	nucleus	57.66	57.66
TraesCS7D01G365600.4	Wheat	nucleus	57.66	57.58
HORVU7Hr1G088370.13	Barley	nucleus	57.38	57.3
TraesCS7A01G357100.1	Wheat	nucleus	57.38	56.99
Solyc08g066200.2.1	Tomato	nucleus	61.79	56.92
Zm00001d053559_P007	Maize	mitochondrion	53.38	56.5
KXG29853	Sorghum	mitochondrion	53.38	55.44
GSMUA_Achr9P16270_001	Banana	nucleus	59.17	53.62
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	49.93	53.0
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	50.76	52.5
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	49.66	51.58
Zm00001d046255_P035	Maize	nucleus	58.07	51.03
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	49.1	50.78
CDX83877	Canola	nucleus	47.31	48.17
CDX96740	Canola	nucleus	47.31	48.11
CDY21725	Canola	nucleus	47.03	47.96
CDX81855	Canola	nucleus	46.9	47.89
CDY17685	Canola	nucleus	44.28	47.49
CDX77811	Canola	nucleus	44.28	46.32
CDY24682	Canola	nucleus	23.59	34.97
CDY05277	Canola	nucleus	24.0	33.92

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078BX65	EnsemblPlants:CDX68897
ProteinID:CDX68897	ProteinID:CDX68897.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00130628001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0004EE9DD6

Description

BnaC01g05560D

Coordinates

chrLK031789:+:1813223..1818332

Molecular Weight (calculated)

82082.2 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.440

Length

725 amino acids

Sequence
(BLAST)

001: MVGTQSVNSP KSYGITKPLS LAGPSAADFK RNLELEKFLV DEGLYESEED TMRREEVLGR IDQIVKHWVK QLTQQRGYTD QMVEDANAVI FTFGSYRLGV
101: HGPGADIDTL CVGPSYVNRE EDFFMILHDM LAEMEEVTEL QPVPDAHVPV MKFKFQGISI DLLYASISRL VVPQDLDISN SSVLCDVDEP TVRSLNGCRV
201: ADQILKLVPN FEHFRTTLRC LKYWAKRRGV YSNVTGFLGG VNWALLVARV CQLYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDELG FPVWDPRKNH
301: RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNN ILQEIELNKQ HWSSLFEQYM FFEAYKNYLQ VDIVAADAED LLAWKGWVES RFRQLTLKIE
401: RDTNGMLMCH PQPNEYVDTS REILHCAFFM GLQRAEGVGG QECQQFDIRG TVEEFRQEVN MYMFWKPGMD VYVSHVRRRQ LPSFVFPVGY RRPRPSRHQN
501: QPGGRTGEDG TVSNSVVERH VKRKNDNEMM DARPEKPEKR ASLSPHSLDI VSPDNSAITT GCTPPLCNLR RSPGEGIEAA NLNTDSPELA NLARDECNSG
601: SEQALEVDSM ALVQECSDPA EAFGKCVTPD SSDVIGREEN LDRDLKSVSI SVADESVQLG RSYGQNRDYE EFEFAATKPD PFVGKGNLYS QSGIPEDLQS
701: NSLVSGMEKA EDGAGSSRLS LKSTV

Best Arabidopsis Sequence Match ( AT4G32850.2 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.