Factsheet for Bra011388.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68897	Canola	nucleus	90.19	52.0
CDX75292	Canola	nucleus	90.43	51.85
Solyc12g095890.1.1	Tomato	nucleus	67.46	46.46
PGSC0003DMT400075574	Potato	nucleus	67.22	46.37
AT4G32850.8	Thale cress	nucleus	84.21	46.01
Os02t0227400-01	Rice	extracellular	62.68	42.95
Bra034276.1-P	Field mustard	cytosol	78.23	42.41
OQU76574	Sorghum	nucleus	69.14	41.58
Zm00001d036977_P001	Maize	nucleus	69.38	41.31
GSMUA_Achr10P...	Banana	nucleus	68.18	41.01
GSMUA_Achr6P14860_001	Banana	nucleus	66.03	40.95
VIT_11s0016g03040.t01	Wine grape	nucleus	58.13	40.64
KRH62113	Soybean	nucleus	68.66	39.42
Zm00001d053559_P007	Maize	mitochondrion	64.59	39.42
TraesCS7B01G270600.4	Wheat	nucleus	67.94	39.17
TraesCS7D01G365600.4	Wheat	nucleus	67.94	39.12
KXG29853	Sorghum	mitochondrion	65.31	39.11
HORVU7Hr1G088370.13	Barley	nucleus	67.46	38.84
TraesCS7A01G357100.1	Wheat	nucleus	67.7	38.77
KRH52804	Soybean	nucleus	67.7	38.66
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	61.72	37.77
Solyc08g066200.2.1	Tomato	nucleus	70.81	37.61
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	61.96	36.95
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	60.29	36.1
GSMUA_Achr9P16270_001	Banana	nucleus	67.94	35.5
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	59.33	35.38
Zm00001d046255_P035	Maize	nucleus	67.7	34.3
Bra024894.1-P	Field mustard	nucleus	53.11	33.04
Bra016573.1-P	Field mustard	nucleus	52.39	31.65
Bra031010.1-P	Field mustard	nucleus	51.91	31.49
Bra029588.1-P	Field mustard	nucleus	30.62	24.9

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	EnsemblPlantsGene:Bra011388	EnsemblPlants:Bra011388.1	EnsemblPlants:Bra011388.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0043631	GO:GO:0046872
UniProt:M4D4I4	PFAM:PF01909	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0002546079

Description

AT4G32850 (E=5e-192) nPAP | nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding

Coordinates

chrA01:-:2394145..2399115

Molecular Weight (calculated)

47509.1 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.224

Length

418 amino acids

Sequence
(BLAST)

001: MVGTQSVNSP KSYGITKPLS LAGPSAADFK RNLELEKFLV DEGLYESEED TMRREEVLGR IDQIVKHWVK QLTQQRGYTD QMVEDANAVI FTFGSYRLGV
101: HGPGADIDTL CVGPSYVNRE EDFFMILHDM LAEMEEVTEL QPVPDAHVPV MKFKFQGISI DLLYASISRL VVPQDLDISN SSVLCDVDEP TVRSLNGCRV
201: ADQILKLVPN FEHFRTTLRC LKYWAKRRGV YSNVTGFLGG VNWALLVARV CQLYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDELG FPVWDPRKNH
301: RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNN ILQGFEFAAT KPDPFVGKGN LFSQSGIPED LQTAFIVDIH EKPVLLTCLK TIQHAKDLKT
401: RKKKTTNLIT DSEHISNG

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.