Factsheet for Zm00001d036977_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76574	Sorghum	nucleus	93.59	94.53
Zm00001d046255_P035	Maize	nucleus	91.88	78.18
TraesCS7B01G270600.4	Wheat	nucleus	79.77	77.24
TraesCS7D01G365600.4	Wheat	nucleus	79.63	77.0
TraesCS7A01G357100.1	Wheat	nucleus	79.91	76.85
HORVU7Hr1G088370.13	Barley	nucleus	79.34	76.72
Bra011388.1-P	Field mustard	nucleus	41.31	69.38
PGSC0003DMT400075574	Potato	nucleus	56.55	65.51
Solyc12g095890.1.1	Tomato	nucleus	56.41	65.24
GSMUA_Achr10P...	Banana	nucleus	63.39	64.03
Zm00001d053559_P007	Maize	mitochondrion	60.83	62.34
GSMUA_Achr6P14860_001	Banana	nucleus	59.12	61.57
VIT_11s0016g03040.t01	Wine grape	nucleus	51.0	59.87
KRH62113	Soybean	nucleus	61.54	59.34
CDX68897	Canola	nucleus	61.25	59.31
CDX75292	Canola	nucleus	61.4	59.12
KRH52804	Soybean	nucleus	60.97	58.47
Zm00001d031424_P001	Maize	cytosol	13.96	57.31
CDX77017	Canola	nucleus	60.26	56.32
AT4G32850.8	Thale cress	nucleus	60.68	55.69
CDY35331	Canola	nucleus	60.26	55.51
GSMUA_Achr9P16270_001	Banana	nucleus	62.39	54.75
Zm00001d040140_P001	Maize	cytosol	14.1	54.7
Bra034276.1-P	Field mustard	cytosol	59.97	54.6
Zm00001d016073_P001	Maize	cytosol	14.67	54.21
Zm00001d044377_P001	Maize	cytosol	11.97	54.19
Solyc08g066200.2.1	Tomato	nucleus	60.26	53.75
Zm00001d002505_P001	Maize	nucleus	41.31	52.54
AT2G25850.2	Thale cress	nucleus	59.26	52.0
Zm00001d033448_P004	Maize	nucleus	45.58	42.95
Zm00001d013599_P016	Maize	nucleus	45.73	42.8
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	7.12	34.48
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	7.12	31.45
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	22.22	30.71
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	23.5	30.56
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	21.65	28.36

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A096RRB4	ProteinID:AQK82549.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000220F138
EnsemblPlantsGene:Zm00001d036977	EnsemblPlants:Zm00001d036977_P001	EnsemblPlants:Zm00001d036977_T001	SEG:seg	:	:

Description

Nuclear poly(A) polymerase 2

Coordinates

chr6:-:108070822..108076516

Molecular Weight (calculated)

78836.6 Da

IEP (calculated)

5.760

GRAVY (calculated)

-0.388

Length

702 amino acids

Sequence
(BLAST)

001: MASGSDAPKQ YGITKPLSLL GPVEADLQRT EELEKFLLES GLYESPDESA RREEVLGKLD QIVKDWVKQL TSQRGYTDQM VEEANAVLFT FGSYRLGVHG
101: PGADIDTLCV GPSYVNREED FFIVLHGILA QTEDVTELQP VPDAHVPVMK FKFHGISIDL LYASVSLLVV PADLDISQGS VLYDVDEATV RSLNGCRVAD
201: QIIRLVPNFE NFRTALRCLK YWAKRRGVYS NVTGFLGGVN WALLVARVCQ LYPNAVPSML VSRFFRVFTQ WQWPNPVMLC SIEEEELGFP VWDPRKNPRD
301: RCHHMPIITP AYPCMNSSYN VSTSTLRVML EQFQFGNRIC QEIEMNKTSW PALFEPFQFF EAYKNYLQVD IIAEDDEDLR LWKGWVESRL RQLTLKIERD
401: TYGMLQCHPY PHEYADPSRQ CAHCAFFMGL SRKEGVKIQE GQQFDIRGTV DEFRHEINMY MFWKPGMELA VSHVRRKQVP AYVFPEGYKR PRPSRHVNHQ
501: SDKNDTEDGT ATRSPDSQLK RKHDSVGTDD IRYAKRSSTS PVHPKNSPQS GSTGDETRCN NQIKRAPSDA SGGSPASPQA SERSPDTILS APRCTTTGAV
601: CSGDAISKHS SVPLVENCTT PTVAVCTTLK RVAEKVVSEL VGSERLGSNN SAELLESMEK EDVLAENVRF GGNGVAQGGL PEELEVMLLV HPSPVYALSN
701: MI

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.