CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35331	Canola	nucleus	98.0	96.59
Bra034276.1-P	Field mustard	cytosol	96.67	94.16
AT2G25850.2	Thale cress	nucleus	83.22	78.12
CDY65137	Canola	cytosol, nucleus, plastid	8.66	77.38
CDY52248	Canola	cytosol, nucleus, plastid	8.66	77.38
CDX75292	Canola	nucleus	73.37	75.58
CDX68897	Canola	nucleus	72.7	75.31
PGSC0003DMT400075574	Potato	nucleus	54.73	67.82
Solyc12g095890.1.1	Tomato	nucleus	54.33	67.22
CDY69371	Canola	cytosol	7.32	65.48
GSMUA_Achr10P...	Banana	nucleus	56.59	61.15
OQU76574	Sorghum	nucleus	56.06	60.58
Zm00001d036977_P001	Maize	nucleus	56.32	60.26
KRH62113	Soybean	nucleus	58.32	60.16
KRH52804	Soybean	nucleus	58.46	59.97
GSMUA_Achr6P14860_001	Banana	nucleus	53.4	59.5
Os02t0227400-01	Rice	extracellular	48.2	59.34
VIT_11s0016g03040.t01	Wine grape	nucleus	45.54	57.19
TraesCS7B01G270600.4	Wheat	nucleus	54.99	56.97
TraesCS7D01G365600.4	Wheat	nucleus	54.99	56.89
CDY58017	Canola	cytosol, nucleus, plasma membrane	22.24	56.8
Solyc08g066200.2.1	Tomato	nucleus	59.25	56.54
HORVU7Hr1G088370.13	Barley	nucleus	54.46	56.34
TraesCS7A01G357100.1	Wheat	nucleus	54.73	56.3
Zm00001d053559_P007	Maize	mitochondrion	50.2	55.04
KXG29853	Sorghum	mitochondrion	50.6	54.44
GSMUA_Achr9P16270_001	Banana	nucleus	56.72	53.25
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	48.2	53.0
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	48.34	51.78
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	47.27	50.86
Zm00001d046255_P035	Maize	nucleus	55.39	50.42
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	46.87	50.21
CDX96740	Canola	nucleus	46.21	48.67
CDX83877	Canola	nucleus	45.94	48.46
CDY21725	Canola	nucleus	45.41	47.96
CDX81855	Canola	nucleus	45.27	47.89
CDY17685	Canola	nucleus	42.74	47.49
CDX77811	Canola	nucleus	42.74	46.32
CDY24682	Canola	nucleus	22.9	35.17
CDY05277	Canola	nucleus	23.17	33.92

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078CJZ1	EnsemblPlants:CDX77017
ProteinID:CDX77017	ProteinID:CDX77017.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00127585001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0004EED153	SEG:seg

Description

BnaC04g38120D

Coordinates

chrLK031809:-:486157..490462

Molecular Weight (calculated)

85105.5 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.432

Length

751 amino acids

Sequence
(BLAST)

001: MVGTQALKSY GITKPLSVSG PSAADLKRNL ELEKFLVDEG LYESKEETMR REEVLGRIDQ IVKDWVKELT HQRGYSDQMT EDANALIFTF GSYRLGVHGP
101: GADIDTLCVG PSYVNREEDF FIILRDILAE MEEVTDLQPV TDAHVPVMKF KFQGISIDLL YASISLLVVP QDLDISNSSV LSDVDEQTVR SLNGCRVADQ
201: ILKLVPNFEH FRTTLRCMKY WAKRRGVYSN VTGFLGGVNW ALLVARLCQL YPNAIPSMLV SRFFRVYTQW RWPNPVMLCA IEEDELGIPV WDPRKYHRDR
301: YHLMPIITPA YPCMNSSYNV SQSTLRVMME QFQYGNKICQ DIELNKQHWS SLFEQYMFFE AYKNYLQVDV LAADAEDLLA WKGWVESRFR QLTLKIERDT
401: NGMLMCHPQP NEYVDTSKQF RHCAFFMGLQ RAEGFGGQEC QQFDIRGTVD EFRQDVNMYM FWRPGMDVFV SHVRRRQLPP FVFPNGYKRF RQSKPQNQQG
501: GEPGEPVESL SANVERHAKR KNDNELMDTR PEKPEKRASV SPPSVDVVSP ECSAITTGGT PPIGIVSGPR AECLVISDIG CSIPNVEHNS GSKQNVEVDN
601: RSLVQGCRDP SVVVTCEGGQ NKEKGRVVGS ESINDTDKQR LPRRPNLKED VDRVERESML GEIADGVLQN GLCGRNLDHE GFLAAASLDS SGEHRNLHSD
701: GLLKSGLSEE LQTNNLLMGM GRPEDGARSE SLQNSLMRHV LLQPIVNLCK S

Best Arabidopsis Sequence Match ( AT2G25850.2 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGARSES LQNEMMRHVF LQPIIGLCKS

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.