CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX88655
CDX91600
CDX98205
CDY09421
CDY11833
CDY12057
CDY43886
CDY46934
CDY66642
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	CDX77591	AT1G30460.1	16897494
AT3G06560.1	CDX98205	AT1G30460.1	16897494
AT3G06560.1	CDY12057	AT1G30460.1	16897494
AT3G06560.1	CDX77591	AT1G30460.1	18479511
AT3G06560.1	CDX98205	AT1G30460.1	18479511
AT3G06560.1	CDY12057	AT1G30460.1	18479511
AT3G06560.1	CDY09421	AT2G01730.1	16897494
AT3G06560.1	CDY66642	AT2G01730.1	16897494
AT3G06560.1	CDX91600	AT5G51660.1	16897494
AT3G06560.1	CDY46934	AT5G51660.1	16897494
AT3G06560.1	CDX88655	AT5G58040.1	18479511
AT3G06560.1	CDY11833	AT5G58040.1	18479511
AT3G06560.1	CDY43886	AT5G58040.1	18479511
AT3G06560.1	CDY70580	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029588.1-P	Field mustard	nucleus	98.98	94.16
CDY05277	Canola	nucleus	95.5	91.03
AT3G06560.1	Thale cress	nucleus	76.07	73.37
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	52.97	51.9
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	50.31	51.36
Solyc12g099180.1.1	Tomato	cytosol	44.38	49.89
VIT_05s0077g00650.t01	Wine grape	plastid	56.85	49.38
PGSC0003DMT400011757	Potato	nucleus	52.35	45.71
HORVU0Hr1G029140.2	Barley	cytosol	42.54	45.32
HORVU0Hr1G035930.1	Barley	cytosol	42.54	45.32
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	13.09	44.14
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	44.79	43.98
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	49.49	43.45
TraesCS2D01G095000.1	Wheat	cytosol	44.58	41.21
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	44.58	41.05
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	13.29	40.88
Os07t0688500-00	Rice	cytosol	43.56	40.65
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	42.54	38.81
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	39.88	38.39
Os03t0313300-01	Rice	mitochondrion	42.74	38.28
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	42.13	38.15
HORVU2Hr1G016100.3	Barley	cytosol	40.9	37.74
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	42.33	37.5
HORVU4Hr1G052840.1	Barley	plastid	41.1	37.08
TraesCS4A01G123900.1	Wheat	nucleus	40.49	36.67
TraesCS4B01G180500.1	Wheat	nucleus	40.29	36.48
TraesCS4D01G182000.1	Wheat	nucleus	40.08	36.3
CDY65137	Canola	cytosol, nucleus, plastid	6.13	35.71
CDY52248	Canola	cytosol, nucleus, plastid	6.13	35.71
OQU92698	Sorghum	cytosol, plasma membrane, plastid	41.1	33.22
CDY69371	Canola	cytosol	5.52	32.14
CDY58017	Canola	cytosol, nucleus, plasma membrane	15.95	26.53
CDY21725	Canola	nucleus	34.36	23.63
CDX75292	Canola	nucleus	35.17	23.59
CDX68897	Canola	nucleus	34.97	23.59
CDX81855	Canola	nucleus	34.15	23.52
CDX83877	Canola	nucleus	33.95	23.31
CDY17685	Canola	nucleus	32.11	23.22
CDX96740	Canola	nucleus	33.74	23.14
CDX77017	Canola	nucleus	35.17	22.9
CDY35331	Canola	nucleus	35.38	22.7
CDX77811	Canola	nucleus	31.9	22.51

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078GHN8	UniProt:A0A078GHN8
EnsemblPlants:CDY24682	ProteinID:CDY24682	ProteinID:CDY24682.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00027061001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682
PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI0004EE2716	:	:	:	:

Description

BnaA05g30810DBnaA05g30810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHN8]

Coordinates

chrLK032162:-:339091..341561

Molecular Weight (calculated)

55370.8 Da

IEP (calculated)

8.353

GRAVY (calculated)

-0.107

Length

489 amino acids

Sequence
(BLAST)

001: MRRGGERYKG LPPYMAEIEE ECSVSLRQLM VNEGLIPSPE DDKKRRSVIH MLQRIVVRWI KIVAWKRRLP QHHINATNAT IIPYGSYGLG VHGSDSDIDA
101: LCIGPFFATI AEDFFIDLRD LLKNRSEVSE VHCVKDAKVP LIRFKFDGIL VDLPYAQLRV LSIPNNVDVL NPFFLRDINE TSWRSLSGVR ANQCILQIVP
201: SVELFQSLLR CVKLWAKRRG VYGNLNGFLG GVHMAILAAF VCGYNPNATL SSLVASFFST FAYWQWPMPV VLLRDAFAAT GSPPGLMPIQ LPCGGRQYCN
301: SNVTRSTYCK IMSEFHRGNH LMKGYLKHGF NWNSLFEPYP YATTYAWFVK IHLSAANVED LSDWVGWVKS RFRSLLIKIE EVFGLCDPNP TEHLEACEKQ
401: PNIVYYWGLH LRSINVSDIE PVETDFLKNV NNSGSFQGSV GGIQLSVVQA SHLPKNCKDK PVYSRHLPGY VVGYEKINDR DAESTDVKC

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.