Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88655 | Canola | nucleus | 78.5 | 79.92 |
| CDY55018 | Canola | mitochondrion | 7.14 | 69.09 |
| CDY70580 | Canola | cytosol, nucleus, plastid | 32.58 | 59.42 |
| CDY43886 | Canola | nucleus | 63.19 | 57.97 |
| AT5G58040.1 | Thale cress | nucleus | 63.94 | 56.94 |
| KRH12930 | Soybean | nucleus | 38.12 | 31.14 |
| KRH37905 | Soybean | nucleus | 38.31 | 30.96 |
| VIT_11s0037g00130.t01 | Wine grape | nucleus | 41.41 | 29.92 |
| PGSC0003DMT400008250 | Potato | nucleus | 3.29 | 29.66 |
| Solyc07g005320.2.1 | Tomato | nucleus | 36.34 | 28.04 |
| Zm00001d013380_P001 | Maize | nucleus | 31.83 | 26.57 |
| TraesCS4A01G258200.3 | Wheat | nucleus | 32.02 | 26.33 |
| Zm00001d033843_P007 | Maize | nucleus | 31.36 | 26.28 |
| KXG37677 | Sorghum | nucleus | 31.74 | 26.24 |
| TraesCS4B01G056200.1 | Wheat | nucleus | 27.89 | 26.21 |
| TraesCS4D01G056600.1 | Wheat | nucleus | 31.55 | 25.93 |
| HORVU4Hr1G009390.7 | Barley | nucleus | 30.8 | 25.69 |
| GSMUA_Achr7P27630_001 | Banana | nucleus | 31.64 | 24.98 |
| GSMUA_Achr4P14570_001 | Banana | nucleus | 30.14 | 22.91 |
| CDY57616 | Canola | nucleus | 10.99 | 11.58 |
| CDX74095 | Canola | nucleus | 10.99 | 9.23 |
| CDY57615 | Canola | plastid | 1.88 | 8.47 |
Protein Annotations
| EnsemblPlants:CDY11833 | EnsemblPlantsGene:GSBRNA2T00060657001 | InterPro:Fip1 | PANTHER:PTHR36884 | PFAM:PF05182 | ProteinID:CDY11833 |
| ProteinID:CDY11833.1 | SEG:seg | UniParc:UPI0004EDE020 | UniProt:A0A078FIA2 | MapMan:16.2.1.2.6 | : |
Description
BnaC03g12590DBnaC03g12590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIA2]
Coordinates
chrLK032015:-:12585..17047
Molecular Weight (calculated)
119822.0 Da
IEP (calculated)
5.673
GRAVY (calculated)
-1.246
Length
1065 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDEDDEFGDL YSDVLPPFQP PPPPLRSIDL NLRSHEQDAA EPNSPSVARV SETTASKPST TPSHDAIGDD KDMNFDIEEP YAADSTPAIP GLGTDREGRA
0101: IIEQVGDGGY GGRGEGDDWD SDSEDDLQIV LNDNVMMGAD RRARLGDNED DDEEPLVIVD KNQPMEEQQL WGEEEAVDRD GKEGGEAVKG SAAGYHPFHS
0201: QFKVRVNAPM LSLVTLLNGR GSCRGPVFIF ISPLYLYIKY VRPGASPIPG SVASAAGQVR PPANLGPMAG RGRGDWRPMG MRNASAAQKG YHQTWGGNAA
0301: GRGLDFTLPS HKTIFEFDID AFEEKPWRYQ GVDITDYFNF GLNEETWKDY CKHLDQHRIE TTMKSRIRVY ESGRTDQGYD PYLPPELAAA TGAQVVPVDS
0401: SNLVKLDTAQ GDSANIRPPL PPGRPIPVET GSVERPSSID TRAPRMRDLE AIIEIVCEDS HEDEPSGENG AEQADSGQSF RSSSPVGDRG TRSSSVDRED
0501: VGGEAGKDYE IEEEHKMSSA VPRSAVEEDD GGGSKTERSS ESSKARCGSH RDHQQLKDSA EEEVIQDRNH CTRPASNKKH HVNNAQHQSR KYQDIGKEME
0601: RTRAGSKGES GEDFDKRKER DVDGGVWRRR EDDTFSRRGG DEGSRKRDRG DDHVPSRNHV DDGGLRNNYE LDDHISKRRK VEEYVRRTRS EKNKISFGQR
0701: EESISRLKRE RGDRLDYQKR DVQHKIRDDI YDHASLRHRD DFYMQRDGNE RLRERGDLDK LKLTHEDGLS APGRERQVAA RGHRGSEDRS SSRMKDEYKE
0801: HLTKDTTRQT KQTKKREYPG EESSSYHRGH GDDIVSNEKK TRLERTSAKS DKVVESLDGQ RFQDRNHKDS RRKIKEQSED TDSLRNKQGE QNGSSQVTGL
0901: KRTNEARNYR SEIPQQHNAT KRHKENASSG DELQDSKRGR TKFERWGSHK ERDDDVTAKG SSSTSSKIQE KESGHDLAET KDGSKKGQGD QHLDTVEKLK
1001: KRSERFKLPM PTEKANKAGV KKMESETLPS EKIEGPADSE QECVWEELCC VRIGHKGDSE RILLY
0101: IIEQVGDGGY GGRGEGDDWD SDSEDDLQIV LNDNVMMGAD RRARLGDNED DDEEPLVIVD KNQPMEEQQL WGEEEAVDRD GKEGGEAVKG SAAGYHPFHS
0201: QFKVRVNAPM LSLVTLLNGR GSCRGPVFIF ISPLYLYIKY VRPGASPIPG SVASAAGQVR PPANLGPMAG RGRGDWRPMG MRNASAAQKG YHQTWGGNAA
0301: GRGLDFTLPS HKTIFEFDID AFEEKPWRYQ GVDITDYFNF GLNEETWKDY CKHLDQHRIE TTMKSRIRVY ESGRTDQGYD PYLPPELAAA TGAQVVPVDS
0401: SNLVKLDTAQ GDSANIRPPL PPGRPIPVET GSVERPSSID TRAPRMRDLE AIIEIVCEDS HEDEPSGENG AEQADSGQSF RSSSPVGDRG TRSSSVDRED
0501: VGGEAGKDYE IEEEHKMSSA VPRSAVEEDD GGGSKTERSS ESSKARCGSH RDHQQLKDSA EEEVIQDRNH CTRPASNKKH HVNNAQHQSR KYQDIGKEME
0601: RTRAGSKGES GEDFDKRKER DVDGGVWRRR EDDTFSRRGG DEGSRKRDRG DDHVPSRNHV DDGGLRNNYE LDDHISKRRK VEEYVRRTRS EKNKISFGQR
0701: EESISRLKRE RGDRLDYQKR DVQHKIRDDI YDHASLRHRD DFYMQRDGNE RLRERGDLDK LKLTHEDGLS APGRERQVAA RGHRGSEDRS SSRMKDEYKE
0801: HLTKDTTRQT KQTKKREYPG EESSSYHRGH GDDIVSNEKK TRLERTSAKS DKVVESLDGQ RFQDRNHKDS RRKIKEQSED TDSLRNKQGE QNGSSQVTGL
0901: KRTNEARNYR SEIPQQHNAT KRHKENASSG DELQDSKRGR TKFERWGSHK ERDDDVTAKG SSSTSSKIQE KESGHDLAET KDGSKKGQGD QHLDTVEKLK
1001: KRSERFKLPM PTEKANKAGV KKMESETLPS EKIEGPADSE QECVWEELCC VRIGHKGDSE RILLY
0001: MEEDDEFGDL YSDVLQPFQP PVVLPPPPPL PHRSIDLNLR SQDQDVSEPN SAPISRVSDN DAVKLSTQDA TRQAIVDGGG DDKDMSFDIE EPDADSTPTI
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEGE YVWDERSCVR IGREYA
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEGE YVWDERSCVR IGREYA
Arabidopsis Description
FIPS5FIP1[V]-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KDH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.