CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0308850-00	Rice	mitochondrion, nucleus	4.24	5.0
Os03t0308900-01	Rice	nucleus	8.05	3.88
CDY55018	Canola	mitochondrion	1.69	3.64
KXG39524	Sorghum	cytosol	2.12	3.55
TraesCS4D01G183600.3	Wheat	nucleus	11.02	2.48
TraesCS4B01G182200.1	Wheat	nucleus	11.02	2.48
HORVU4Hr1G053460.2	Barley	nucleus	9.32	2.36
TraesCS4A01G122300.2	Wheat	nucleus	9.75	2.19
Zm00001d028902_P003	Maize	nucleus	9.75	2.17
CDY57616	Canola	nucleus	8.05	1.88
CDY11833	Canola	nucleus	8.47	1.88
KRH36974	Soybean	nucleus	8.47	1.82
CDY43886	Canola	nucleus	8.9	1.81
CDY70580	Canola	cytosol, nucleus, plastid	4.24	1.71
KRH11949	Soybean	nucleus	7.63	1.64
CDX88655	Canola	nucleus	7.2	1.63
CDX74095	Canola	nucleus	8.47	1.58
PGSC0003DMT400011772	Potato	nucleus	6.36	1.33
Solyc12g099280.1.1	Tomato	nucleus	5.51	1.15
VIT_05s0077g01000.t01	Wine grape	nucleus	5.08	0.92

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078J2H2	UniProt:A0A078J2H2	EnsemblPlants:CDY57615	ProteinID:CDY57615
ProteinID:CDY57615.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00022420001
InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI0004EE2B2E	SEG:seg

Description

BnaCnng32180DPeptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078J2H2]

Coordinates

chrLK033589:-:14383..16587

Molecular Weight (calculated)

26514.9 Da

IEP (calculated)

9.035

GRAVY (calculated)

-0.360

Length

236 amino acids

Sequence
(BLAST)

001: MARIKPQALL NQSKKKKGPS RISISTIVVC NLVVAVVVLS LVTTYRHWSQ RSINVIETQS QRFEDTNAAS EQKSYDLPGY ADISTSKGLI TVELFKDASP
101: EAVDRFLDLC QKDHFKGMPF HRVIKNYLVQ AGHSQSSIPV EEWTSKGKLR GRLNTSPKHE AFMLGTPKTK GNNNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHYQ PKAQIGIISV ILKREL

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.