CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX88655
CDX98205
CDY11833
CDY12057
CDY43886
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	CDX77591	AT1G30460.1	18479511
AT4G25550.1	CDX98205	AT1G30460.1	18479511
AT4G25550.1	CDY12057	AT1G30460.1	18479511
AT4G25550.1	CDX88655	AT5G58040.1	18479511
AT4G25550.1	CDY11833	AT5G58040.1	18479511
AT4G25550.1	CDY43886	AT5G58040.1	18479511
AT4G25550.1	CDY70580	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013899.1-P	Field mustard	cytosol	83.9	99.0
CDX89414	Canola	cytosol	83.9	99.0
CDY52363	Canola	cytosol	82.63	97.5
CDY54086	Canola	cytosol	82.63	97.5
CDX92717	Canola	cytosol	81.36	96.0
CDY50198	Canola	cytosol	80.93	95.5
AT4G25550.1	Thale cress	cytosol	80.51	95.0
KRH35335	Soybean	cytosol	27.54	89.04
PGSC0003DMT400037077	Potato	cytosol	23.31	88.71
PGSC0003DMT400084196	Potato	peroxisome	24.58	86.57
KRG91493	Soybean	endoplasmic reticulum, nucleus	73.31	86.5
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	71.19	84.0
Solyc03g025880.2.1	Tomato	nucleus	71.19	84.0
Solyc01g009630.2.1	Tomato	nucleus	71.19	84.0
Solyc01g009620.2.1	Tomato	nucleus	70.34	83.0
HORVU2Hr1G124110.1	Barley	cytosol	71.19	82.76
TraesCS2D01G592500.2	Wheat	cytosol	71.19	82.76
TraesCS2B01G608100.1	Wheat	cytosol	71.19	82.76
TraesCS2A01G580600.1	Wheat	nucleus	71.19	82.76
TraesCS1B01G366600.1	Wheat	cytosol	70.34	81.77
TraesCS1D01G355400.1	Wheat	cytosol	69.92	81.28
TraesCS1A01G355100.1	Wheat	cytosol	69.92	81.28
PGSC0003DMT400037076	Potato	cytosol, plastid	38.14	78.95
HORVU1Hr1G081030.2	Barley	cytosol	34.75	77.36
CDX88086	Canola	cytosol, mitochondrion, peroxisome	10.59	51.02
HORVU0Hr1G001450.1	Barley	plastid	38.98	50.83
GSMUA_AchrUn_...	Banana	plastid	18.64	49.44
CDY43528	Canola	cytosol	44.49	48.39
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	9.75	41.82
CDX68589	Canola	plastid	44.92	37.32
CDX85073	Canola	cytosol, extracellular, nucleus	30.08	33.33

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	GO:A0A078DZ06	EnsemblPlants:CDX94441	ProteinID:CDX94441	ProteinID:CDX94441.1
InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00157586001	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047
SUPFAM:SSF55811	UniParc:UPI0004EE5122	:	:	:	:

Description

BnaC01g17430D

Coordinates

chrLK031881:-:1167727..1171360

Molecular Weight (calculated)

27065.9 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.531

Length

236 amino acids

Sequence
(BLAST)

001: MFYMMHKERK AATTSLQSPL DPGESKQKER EREEGESAMS QIVNTYPLSN YSFGTKEPKL EKDTSVADRL ARMKINYMKE GMRTSVDAIL LVQEHNHPHI
101: LLLQIGNTFC KLPGGRVKPG ENEVEGLKRK LTSKLGGNSA GLVPDWKVGE CVATWWRPNF ETMMYPYCPP HITKPKECKR LYVVHLSEKE YFAVPKNLKL
201: LAVPLFELYD NVQRYGPVIS TIPQQLSRFH FNMISS

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.