Factsheet for PGSC0003DMT400084196

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008250
PGSC0003DMT400054373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	PGSC0003DMT400054373	AT1G30460.1	18479511
AT4G25550.1	PGSC0003DMT400008250	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037076	Potato	cytosol, plastid	89.55	52.63
GSMUA_AchrUn_...	Banana	plastid	46.27	34.83
HORVU0Hr1G001450.1	Barley	plastid	89.55	33.15
Solyc01g009620.2.1	Tomato	nucleus	94.03	31.5
KRG91493	Soybean	endoplasmic reticulum, nucleus	94.03	31.5
Solyc01g009630.2.1	Tomato	nucleus	92.54	31.0
Bra019155.1-P	Field mustard	cytosol	92.54	31.0
CDX92717	Canola	cytosol	92.54	31.0
CDY50198	Canola	cytosol	92.54	31.0
TraesCS1A01G355100.1	Wheat	cytosol	92.54	30.54
TraesCS1B01G366600.1	Wheat	cytosol	92.54	30.54
TraesCS1D01G355400.1	Wheat	cytosol	92.54	30.54
TraesCS2A01G580600.1	Wheat	nucleus	92.54	30.54
HORVU2Hr1G124110.1	Barley	cytosol	92.54	30.54
TraesCS2B01G608100.1	Wheat	cytosol	92.54	30.54
TraesCS2D01G592500.2	Wheat	cytosol	92.54	30.54
AT4G25550.1	Thale cress	cytosol	91.04	30.5
CDY54086	Canola	cytosol	88.06	29.5
CDY52363	Canola	cytosol	88.06	29.5
CDX89414	Canola	cytosol	88.06	29.5
Bra013899.1-P	Field mustard	cytosol	88.06	29.5
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	86.57	29.0
CDX94441	Canola	cytosol	86.57	24.58
Bra010457.1-P	Field mustard	cytosol	88.06	15.01
PGSC0003DMT400046377	Potato	cytosol	44.78	14.85
PGSC0003DMT400037077	Potato	cytosol	2.99	3.23
HORVU1Hr1G081030.2	Barley	cytosol	4.48	2.83
KRH35335	Soybean	cytosol	2.99	2.74

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:M1D7J2	PFAM:PF13869	EnsemblPlantsGene:PGSC0003DMG400033870	PGSC:PGSC0003DMG400033870	EnsemblPlants:PGSC0003DMT400084196
PANTHER:PTHR13047	UniParc:UPI0002962D0D	:	:	:	:

Description

Cleavage and polyadenylation specificity factor 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400033870]

Coordinates

chr4:+:40163560..40163969

Molecular Weight (calculated)

7590.5 Da

IEP (calculated)

10.284

GRAVY (calculated)

-0.407

Length

67 amino acids

Sequence
(BLAST)

1: MEKDSSVADR LARMKVNYMK EGMRTSVEGI LLVQEHNHPH ILLLQIGNTF CKLPGGRLKP GEMKSRV

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.