Factsheet for HORVU2Hr1G124110.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G009390.7
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT4G25550.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G592500.2	Wheat	cytosol	99.51	99.51
TraesCS2B01G608100.1	Wheat	cytosol	99.51	99.51
TraesCS2A01G580600.1	Wheat	nucleus	99.51	99.51
GSMUA_Achr2P03900_001	Banana	cytosol	91.63	93.0
PGSC0003DMT400084196	Potato	peroxisome	30.54	92.54
GSMUA_Achr1P17490_001	Banana	unclear	91.13	92.5
KRH35335	Soybean	cytosol	32.51	90.41
GSMUA_Achr9P20560_001	Banana	cytosol	78.82	90.4
Solyc03g025880.2.1	Tomato	nucleus	87.68	89.0
PGSC0003DMT400037077	Potato	cytosol	27.09	88.71
PGSC0003DMT400037076	Potato	cytosol, plastid	49.26	87.72
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	86.21	87.5
KRG91493	Soybean	endoplasmic reticulum, nucleus	85.71	87.0
CDX92717	Canola	cytosol	84.73	86.0
HORVU1Hr1G081030.2	Barley	cytosol	44.83	85.85
CDY54086	Canola	cytosol	84.24	85.5
CDY52363	Canola	cytosol	84.24	85.5
CDY50198	Canola	cytosol	84.24	85.5
Bra019155.1-P	Field mustard	cytosol	84.24	85.5
AT4G25550.1	Thale cress	cytosol	83.74	85.0
Solyc01g009620.2.1	Tomato	nucleus	83.74	85.0
Solyc01g009630.2.1	Tomato	nucleus	83.74	85.0
CDX89414	Canola	cytosol	83.25	84.5
Bra013899.1-P	Field mustard	cytosol	83.25	84.5
VIT_15s0046g03350.t01	Wine grape	cytosol	88.18	76.17
CDX94441	Canola	cytosol	82.76	71.19
HORVU0Hr1G001450.1	Barley	plastid	54.68	61.33
Bra010457.1-P	Field mustard	cytosol	83.25	43.0
HORVU7Hr1G078670.4	Barley	plastid	46.8	36.82

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	UniProt:A0A287JSA9	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:HORVU2Hr1G124110	EnsemblPlants:HORVU2Hr1G124110.1
InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047	SUPFAM:SSF55811	UniParc:UPI000B477945

Description

No Description!

Coordinates

chrchr2H:-:757665749..757677154

Molecular Weight (calculated)

23210.5 Da

IEP (calculated)

9.541

GRAVY (calculated)

-0.237

Length

203 amino acids

Sequence
(BLAST)

001: MVGAPTSSVV NVYPLANYTF GTKEPKMEKD TSVADRLARM KVNYMKEGMR TSVEAILLVQ EHNHPHILLL QIGNTFCKLP GGRLKPGENE IEGLKRKLCS
101: KLAVNSPSFP PNWQVGECVA VWWRPNFETV MYPYCPPHIT KPKECKKLFI VHLTEREYFA VPRNLKLLAV PLFELYDNVQ RYGPVISTIP QQLSRFQFNM
201: VSS

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.