Factsheet for GSMUA_Achr1P17490_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P03900_001	Banana	cytosol	96.0	96.0
GSMUA_Achr9P20560_001	Banana	cytosol	83.5	94.35
HORVU2Hr1G124110.1	Barley	cytosol	92.5	91.13
TraesCS2A01G580600.1	Wheat	nucleus	92.5	91.13
TraesCS2B01G608100.1	Wheat	cytosol	92.5	91.13
TraesCS2D01G592500.2	Wheat	cytosol	92.5	91.13
TraesCS1B01G366600.1	Wheat	cytosol	92.0	90.64
TraesCS1A01G355100.1	Wheat	cytosol	91.5	90.15
TraesCS1D01G355400.1	Wheat	cytosol	91.5	90.15
HORVU1Hr1G081030.2	Barley	cytosol	43.5	82.08
GSMUA_AchrUn_...	Banana	plastid	26.0	58.43
HORVU0Hr1G001450.1	Barley	plastid	50.5	55.8
GSMUA_Achr3P26260_001	Banana	cytosol	55.0	51.16

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr1G17490_001	EnsemblPlants:GSMUA_Achr1P17490_001	EnsemblPlants:GSMUA_Achr1T17490_001
InterPro:IPR000086	UniProt:M0S0Q7	InterPro:NUDIX_hydrolase-like_dom_sf	InterPro:NUDIX_hydrolase_dom	PFAM:PF13869	PIRSF:PIRSF017888
PFscan:PS51462	PANTHER:PTHR13047	SUPFAM:SSF55811	UniParc:UPI0002962788	:	:

Description

Cleavage and polyadenylation specificity factor subunit 5 [Source:GMGC_GENE;Acc:GSMUA_Achr1G17490_001]

Coordinates

chr1:+:13014572..13018520

Molecular Weight (calculated)

23023.2 Da

IEP (calculated)

9.541

GRAVY (calculated)

-0.295

Length

200 amino acids

Sequence
(BLAST)

001: MVNSSVVNMY PLSNYTFGTK EAKMEKDTSV ADRLARMKVN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEIEG LRRKLCSKLA
101: ANSPSFQPNW QIGECVAIWW RPNFETVMYP YCPPHITKPK ECKKLFLVHL SEREYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFQFNMVSS

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.