Factsheet for GSMUA_Achr3P26260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02370_001
GSMUA_Achr3P07740_001
GSMUA_Achr4P14570_001
GSMUA_Achr4P25770_001
GSMUA_Achr7P02380_001
GSMUA_Achr7P27630_001
GSMUA_Achr8P22800_001
GSMUA_Achr9P15710_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	GSMUA_Achr3P07740_001	AT5G06710.1	21798944
AT4G29820.1	GSMUA_Achr7P02380_001	AT5G06710.1	21798944
AT4G29820.1	GSMUA_Achr8P22800_001	AT5G06710.1	21798944
AT4G29820.1	GSMUA_Achr9P15710_001	AT5G06710.1	21798944
AT4G29820.1	GSMUA_Achr4P14570_001	AT5G58040.1	16282318
AT4G29820.1	GSMUA_Achr7P27630_001	AT5G58040.1	16282318
AT4G29820.1	GSMUA_Achr4P14570_001	AT5G58040.1	18479511
AT4G29820.1	GSMUA_Achr7P27630_001	AT5G58040.1	18479511
AT4G29820.1	GSMUA_Achr1P02370_001	AT5G66110.1	21798944
AT4G29820.1	GSMUA_Achr4P25770_001	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046377	Potato	cytosol	57.67	61.39
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	60.47	61.32
Solyc07g041000.2.1	Tomato	cytosol	57.21	60.89
TraesCS7D01G325500.1	Wheat	cytosol	60.0	60.85
AT4G29820.1	Thale cress	cytosol	60.0	58.11
CDY43528	Canola	cytosol	58.6	58.06
Zm00001d050266_P001	Maize	cytosol	60.0	57.59
Os08t0398800-02	Rice	cytosol	60.47	57.52
Bra011138.1-P	Field mustard	cytosol	57.67	56.62
OQU80396	Sorghum	cytosol	62.33	56.3
GSMUA_Achr9P20560_001	Banana	cytosol	45.58	55.37
GSMUA_Achr1P17490_001	Banana	unclear	51.16	55.0
GSMUA_Achr2P03900_001	Banana	cytosol	51.16	55.0
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	13.95	54.55
KRH37445	Soybean	nucleus	55.35	52.89
TraesCS7B01G229300.1	Wheat	cytosol	59.53	52.24
HORVU7Hr1G078670.4	Barley	plastid	60.47	50.39
VIT_11s0016g01760.t01	Wine grape	plastid	66.05	48.8
CDX88086	Canola	cytosol, mitochondrion, peroxisome	10.23	44.9
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	10.23	44.9
CDX68589	Canola	plastid	57.67	43.66
CDX85073	Canola	cytosol, extracellular, nucleus	38.14	38.5
KRH12461	Soybean	plastid	52.09	37.84
GSMUA_AchrUn_...	Banana	plastid	14.88	35.96

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr3G26260_001	EnsemblPlants:GSMUA_Achr3P26260_001	EnsemblPlants:GSMUA_Achr3T26260_001
UniProt:M0SHZ2	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1
SUPFAM:SSF55811	UniParc:UPI000295EB41	SEG:seg	:	:	:

Description

Putative Cleavage and polyadenylation specificity factor subunit 5 [Source:GMGC_GENE;Acc:GSMUA_Achr3G26260_001]

Coordinates

chr3:-:26174494..26177147

Molecular Weight (calculated)

24581.7 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.375

Length

215 amino acids

Sequence
(BLAST)

001: MENGETFHCN DSGDGGGGSN VVEIYPLSRY FFGSKDAIPD KDDCLADRIQ RMKANYAARG MRTCVHGILL VELFQHPHVL LLQVRNSFFK LPGGRLRSGE
101: SDVEGLKRKL SRKLSSEENG TNDDWQIDEL IGMWWRSDFE TLRFPYLPPN LRRPKECTKL FLVKLPMTRH FIVPRNLKLL AVPLCQLHDN SETYGPIISG
201: IPQLLSKFSF NIIQD

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.