Factsheet for GSMUA_Achr1P02370_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P05880_001
GSMUA_Achr4P04370_001
GSMUA_Achr4P05400_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P14340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38580.1	GSMUA_Achr4P04370_001	AT4G27780.1	18823312
AT4G38580.1	GSMUA_Achr4P05400_001	AT4G27780.1	18823312
AT5G66110.1	GSMUA_Achr3P05880_001	AT1G54060.1	21798944
AT5G66110.1	GSMUA_Achr8P23650_001	AT1G54060.1	21798944
AT5G66110.1	GSMUA_Achr9P14340_001	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25770_001	Banana	cytosol, plastid	83.87	83.87
Bra009662.1-P	Field mustard	cytosol	61.29	78.51
AT5G66110.1	Thale cress	cytosol	70.32	74.15
CDX88005	Canola	cytosol	68.39	73.1
CDY07874	Canola	cytosol	68.39	73.1
Zm00001d004138_P001	Maize	cytosol	72.26	72.26
VIT_04s0023g03910.t01	Wine grape	cytosol	56.13	71.9
Os04t0244800-01	Rice	plasma membrane	71.61	71.61
TraesCS2A01G064900.1	Wheat	nucleus	70.97	70.97
TraesCS2B01G077100.1	Wheat	cytosol, plastid	70.97	70.97
TraesCS2D01G063000.1	Wheat	cytosol, plastid	70.97	70.97
EES11880	Sorghum	cytosol	70.97	70.97
AT4G38580.1	Thale cress	cytosol	69.68	70.59
VIT_03s0038g02440.t01	Wine grape	cytosol	70.32	70.32
TraesCS6B01G059000.1	Wheat	cytosol	71.61	69.81
TraesCS6A01G043000.1	Wheat	cytosol	71.61	69.81
KRH60697	Soybean	cytosol	69.03	69.48
CDY65011	Canola	cytosol	68.39	69.28
Bra033570.1-P	Field mustard	cytosol	68.39	69.28
Solyc01g111600.2.1	Tomato	nucleus	68.39	69.28
PGSC0003DMT400015784	Potato	cytosol	68.39	69.28
TraesCS6D01G049600.1	Wheat	cytosol	70.97	69.18
CDX90282	Canola	cytosol	67.74	68.63
CDX72748	Canola	cytosol	67.74	68.63
Bra010738.1-P	Field mustard	cytosol	67.74	68.63
CDY12089	Canola	cytosol	67.1	67.97
Os03t0156600-01	Rice	cytosol	67.1	67.1
EER92834	Sorghum	cytosol	67.1	66.67
KRH29001	Soybean	cytosol	67.1	66.67
PGSC0003DMT400009390	Potato	cytosol	67.74	66.04
Solyc02g083550.1.1	Tomato	cytosol	67.74	66.04
Zm00001d027720_P001	Maize	cytosol	66.45	66.03
VIT_04s0023g03890.t01	Wine grape	cytosol	67.74	65.62
HORVU7Hr1G090970.1	Barley	mitochondrion	64.52	62.89
GSMUA_Achr3P04460_001	Banana	cytosol	58.71	61.07
Bra011581.1-P	Field mustard	cytosol	60.0	60.78
CDY52653	Canola	cytosol	60.0	60.78
CDX69108	Canola	cytosol	59.35	60.13
Bra034669.1-P	Field mustard	cytosol	59.35	59.74
CDX76309	Canola	cytosol	59.35	59.74
AT4G35060.1	Thale cress	cytosol	58.71	59.48
CDY17504	Canola	cytosol	58.71	59.09
GSMUA_Achr4P01830_001	Banana	cytosol	56.77	59.06
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	61.29	59.01
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	61.29	59.01
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	60.0	57.76
GSMUA_Achr3P07890_001	Banana	cytosol, mitochondrion, plastid	55.48	57.72
KRH24318	Soybean	cytosol, nucleus, plastid	30.32	54.65
GSMUA_Achr10P...	Banana	cytosol	49.03	52.05
GSMUA_Achr2P07910_001	Banana	cytosol	49.68	50.99
GSMUA_Achr1P12840_001	Banana	cytosol	49.03	50.33
GSMUA_Achr7P11680_001	Banana	cytosol	47.1	48.99
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	70.32	48.44
KRH28829	Soybean	cytosol	32.9	42.15
GSMUA_Achr2P10210_001	Banana	cytosol	36.13	37.84
GSMUA_Achr11P...	Banana	cytosol	31.61	37.12
GSMUA_Achr10P...	Banana	cytosol	33.55	36.88
GSMUA_Achr3P27280_001	Banana	cytosol	32.26	36.23
GSMUA_Achr3P15460_001	Banana	cytosol	30.97	35.04
GSMUA_Achr7P13900_001	Banana	cytosol	32.26	34.01
GSMUA_Achr6P14470_001	Banana	cytosol	29.03	31.25
HORVU2Hr1G011060.1	Barley	nucleus, plastid	29.68	29.68
GSMUA_Achr11P...	Banana	cytosol	34.19	28.65
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	34.19	27.75
GSMUA_Achr1P00790_001	Banana	cytosol	34.19	27.04

Protein Annotations

EnsemblPlants:GSMUA_Achr1P02370_001	EnsemblPlants:GSMUA_Achr1T02370_001	EnsemblPlantsGene:GSMUA_Achr1G02370_001	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF168	PFAM:PF00403	PFscan:PS50846	SEG:seg
SUPFAM:SSF55008	UniParc:UPI000294A5F3	UniProt:M0RWE5	MapMan:35.1	:	:

Description

heavy metal-associated domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G02370_001]

Coordinates

chr1:-:1928046..1928852

Molecular Weight (calculated)

17392.1 Da

IEP (calculated)

9.854

GRAVY (calculated)

-0.623

Length

155 amino acids

Sequence
(BLAST)

001: MGLLEHVSEL CSVSRSRKKL KKNKQLQTVE LKVRMDCEGC ERRVRKAVEG MKGVSSVEIE PKQKKVTVIG FVDPKKVIKR VEWKTGKKAE PWPYVPYDVV
101: PHPYAPGAYD KKAPPGYVRN VLDDPDAAPL ARASSTEVKY TTAFSDDNPN SCTIM

Best Arabidopsis Sequence Match ( AT5G66110.1 )
(BLAST)

001: MGFRDICYRK HHKKLKQFQK VEIKVKMDCE GCERRVRKSV EGMKGVSKVT VDPKQSKLTV EGFVQPSKVV HRVMHRTGKK AELWPYVPYE VVPHPYAPGA
101: YDKKAPPGYV RNALADPLVA PLARASSFEV KYTSAFSDDN PNACTIM

Arabidopsis Description

HIPP27Heavy metal-associated isoprenylated plant protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZW1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.