Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P14340_001 | Banana | nucleus | 64.11 | 71.55 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 55.94 | 66.28 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 29.21 | 47.77 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 28.47 | 45.63 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 29.7 | 44.44 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 27.48 | 43.53 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 27.48 | 42.69 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 27.97 | 42.48 |
| CDY33246 | Canola | nucleus | 29.7 | 39.22 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 34.41 | 38.19 |
| KRH47662 | Soybean | nucleus, plastid | 34.65 | 38.04 |
| KRH06239 | Soybean | nucleus | 33.91 | 37.03 |
| CDY39099 | Canola | nucleus | 28.96 | 36.91 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 27.72 | 36.13 |
| CDY39101 | Canola | nucleus, plastid | 26.98 | 35.74 |
| Bra021536.1-P | Field mustard | nucleus | 26.98 | 35.62 |
| Solyc03g122030.1.1 | Tomato | nucleus | 31.68 | 35.26 |
| TraesCS6A01G198600.1 | Wheat | nucleus, plastid | 32.18 | 35.14 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 31.93 | 34.58 |
| CDY61477 | Canola | nucleus, plastid | 25.74 | 34.55 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 25.74 | 34.55 |
| Zm00001d025514_P001 | Maize | nucleus | 33.42 | 34.44 |
| EES12241 | Sorghum | nucleus | 34.65 | 34.31 |
| Os04t0445600-00 | Rice | nucleus | 35.4 | 34.29 |
| Zm00001d003549_P001 | Maize | nucleus | 32.18 | 33.77 |
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 34.41 | 33.66 |
| TraesCS2A01G313300.1 | Wheat | nucleus, plastid | 34.65 | 33.65 |
| CDY02487 | Canola | nucleus, plastid | 25.5 | 33.44 |
| Os02t0565000-01 | Rice | nucleus | 34.41 | 33.17 |
| TraesCS2B01G332100.1 | Wheat | nucleus, plastid | 34.16 | 33.17 |
| CDX75751 | Canola | nucleus | 30.45 | 33.06 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 32.67 | 32.84 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 33.17 | 32.21 |
| TraesCS6D01G184500.2 | Wheat | nucleus | 32.92 | 31.97 |
| HORVU6Hr1G050140.1 | Barley | nucleus, plastid | 32.92 | 31.82 |
| CDY08216 | Canola | nucleus | 25.5 | 31.4 |
| Bra014370.1-P | Field mustard | nucleus | 25.99 | 31.34 |
| Zm00001d010753_P001 | Maize | nucleus | 25.25 | 31.1 |
| KXG30464 | Sorghum | nucleus, plastid | 31.68 | 30.33 |
| AT3G14180.1 | Thale cress | nucleus | 32.43 | 29.57 |
| CDY26148 | Canola | nucleus, plastid | 25.74 | 29.13 |
| CDY51405 | Canola | nucleus | 8.91 | 28.35 |
| Bra030909.1-P | Field mustard | nucleus | 8.91 | 28.12 |
| AT1G54060.1 | Thale cress | nucleus | 25.74 | 27.15 |
| CDY33093 | Canola | cytosol, plastid | 25.0 | 23.11 |
| HORVU2Hr1G077940.1 | Barley | cytosol, nucleus, plastid | 11.63 | 20.98 |
| GSMUA_Achr8P26150_001 | Banana | nucleus | 15.35 | 17.71 |
| Zm00001d042917_P001 | Maize | golgi, plasma membrane | 26.73 | 16.27 |
| GSMUA_Achr8P04010_001 | Banana | nucleus | 13.86 | 16.05 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P05880_001 | EnsemblPlants:GSMUA_Achr3T05880_001 | EnsemblPlantsGene:GSMUA_Achr3G05880_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF12 | PFAM:PF13837 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002965B8A |
| UniProt:M0SC56 | MapMan:15.5.20 | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G05880_001]
Coordinates
chr3:-:3962409..3963774
Molecular Weight (calculated)
45012.1 Da
IEP (calculated)
10.542
GRAVY (calculated)
-0.595
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDDDTQSP SRSQSQSVSR SLSPPSSPPP VSVVSPSPGP SPHHHHNGQV AEAVTVAAPP HHALPLALPI QQPRPSPAAG GGGGGGREDC WSEGATSILI
101: DAWGERFLEL SRGNLKQKHW QEVADAITSR DGYTKAPKTD VQCKNRIDTL KKKYKIEKSK VSATGGGATS SWPFFHRLDL LLGPNHKPAP PPPGSDIPAG
201: IPIRPPARLP QLIPQRPRTS QPARKKARAA NGKRQRREPE EEEEVGGGRM AGLRELTQAI LRFGQVYERV ENSKLRQVLE IEKQRMEFTR ELELQRMEFL
301: MKTQMELSQL NNNHHHHGSN SRKKKRLDDA GARLGRTQVF RSVSLLVTRT TKSVVISVYI LSLSCLRYIL FKCYELQYVM VIFSMTMMSL TIWVSVFRSK
401: LAQL
101: DAWGERFLEL SRGNLKQKHW QEVADAITSR DGYTKAPKTD VQCKNRIDTL KKKYKIEKSK VSATGGGATS SWPFFHRLDL LLGPNHKPAP PPPGSDIPAG
201: IPIRPPARLP QLIPQRPRTS QPARKKARAA NGKRQRREPE EEEEVGGGRM AGLRELTQAI LRFGQVYERV ENSKLRQVLE IEKQRMEFTR ELELQRMEFL
301: MKTQMELSQL NNNHHHHGSN SRKKKRLDDA GARLGRTQVF RSVSLLVTRT TKSVVISVYI LSLSCLRYIL FKCYELQYVM VIFSMTMMSL TIWVSVFRSK
401: LAQL
001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
Arabidopsis Description
ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.