Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052798_P001 | Maize | nucleus | 44.28 | 41.1 |
| Os08t0484700-01 | Rice | nucleus | 47.23 | 40.63 |
| VIT_07s0005g06670.t01 | Wine grape | nucleus | 41.7 | 40.07 |
| Zm00001d031266_P001 | Maize | nucleus | 46.13 | 39.19 |
| EES15479 | Sorghum | nucleus | 44.28 | 37.97 |
| TraesCS5D01G550500.1 | Wheat | nucleus | 42.07 | 37.5 |
| KRH07500 | Soybean | cytosol, mitochondrion, nucleus | 36.53 | 37.22 |
| TraesCS4A01G315300.1 | Wheat | nucleus | 42.07 | 37.01 |
| KRH66081 | Soybean | cytosol | 37.64 | 36.43 |
| TraesCS5B01G564200.1 | Wheat | nucleus | 41.33 | 36.36 |
| Solyc06g083430.1.1 | Tomato | nucleus | 42.8 | 35.69 |
| PGSC0003DMT400051788 | Potato | nucleus | 42.8 | 35.58 |
| CDY39785 | Canola | nucleus | 32.47 | 31.65 |
| GSMUA_Achr11P... | Banana | plastid | 35.79 | 30.03 |
| CDY52087 | Canola | nucleus, plastid | 31.73 | 28.96 |
| CDX77381 | Canola | nucleus | 31.73 | 28.96 |
| Bra015090.1-P | Field mustard | nucleus | 31.73 | 28.96 |
| AT3G24860.1 | Thale cress | nucleus | 32.47 | 28.39 |
| GSMUA_Achr11P... | Banana | nucleus | 20.66 | 25.57 |
| GSMUA_Achr4P05890_001 | Banana | nucleus | 24.35 | 21.57 |
| GSMUA_Achr9P22780_001 | Banana | mitochondrion | 23.62 | 18.6 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P04170_001 | EnsemblPlants:GSMUA_Achr6T04170_001 | EnsemblPlantsGene:GSMUA_Achr6G04170_001 | Gene3D:1.10.10.60 | InterPro:IPR006578 | InterPro:MADF-dom |
| PANTHER:PTHR31307 | PANTHER:PTHR31307:SF17 | PFAM:PF13837 | SEG:seg | SMART:SM00595 | UniParc:UPI000296D905 |
| UniProt:M0T415 | MapMan:15.5.20 | : | : | : | : |
Description
Putative Zinc finger protein with KRAB and SCAN domains 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G04170_001]
Coordinates
chr6:-:2863036..2863851
Molecular Weight (calculated)
30721.2 Da
IEP (calculated)
5.367
GRAVY (calculated)
-0.953
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAGPPAAP PRRPVPGQPW SHIETTHLID AYAERWYALK RGQLKAQQWE EVAAAVAARC GIDEPSKTGT QCRHKIEKLR KRYRAERLRP GSSVWPFFSR
101: MDRMECGPLP ISARQPVPPR PASAPSTDED EVEDEEEEEE EDERVGSNTR SINGILREPN WGPSRVPRNH VPATRRALEM EEGESEEEES EGEDAGGNEV
201: TSQVAAVLRG FGDGLVRMEK RRMQLMREVE RDWMQMETKR AEMLRESQRC LLDMIADALP SSKKAKKSHD L
101: MDRMECGPLP ISARQPVPPR PASAPSTDED EVEDEEEEEE EDERVGSNTR SINGILREPN WGPSRVPRNH VPATRRALEM EEGESEEEES EGEDAGGNEV
201: TSQVAAVLRG FGDGLVRMEK RRMQLMREVE RDWMQMETKR AEMLRESQRC LLDMIADALP SSKKAKKSHD L
001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.