Factsheet for Zm00001d052798_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011571_P001
Zm00001d014961_P001
Zm00001d030350_P001
Zm00001d038994_P001
Zm00001d043902_P001
Zm00001d054069_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24860.1	Zm00001d011571_P001	AT3G58630.1	21798944
AT3G24860.1	Zm00001d030350_P001	AT3G58630.1	21798944
AT3G24860.1	Zm00001d038994_P001	AT3G58630.1	21798944
AT3G24860.1	Zm00001d043902_P001	AT3G58630.1	21798944
AT3G24860.1	Zm00001d014961_P001	AT4G10840.1	21798944
AT3G24860.1	Zm00001d054069_P001	AT4G10840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031266_P001	Maize	nucleus	60.96	55.8
Os08t0484700-01	Rice	nucleus	54.45	50.48
TraesCS5D01G550500.1	Wheat	nucleus	48.29	46.38
TraesCS5B01G564200.1	Wheat	nucleus	48.29	45.78
TraesCS4A01G315300.1	Wheat	nucleus	47.26	44.81
GSMUA_Achr6P04170_001	Banana	nucleus	41.1	44.28
VIT_07s0005g06670.t01	Wine grape	nucleus	31.85	32.98
KRH07500	Soybean	cytosol, mitochondrion, nucleus	27.4	30.08
KRH66081	Soybean	cytosol	28.77	30.0
Solyc06g083430.1.1	Tomato	nucleus	30.48	27.38
PGSC0003DMT400051788	Potato	nucleus	29.45	26.38
Zm00001d029974_P001	Maize	nucleus	28.08	25.55
Zm00001d000045_P001	Maize	nucleus	27.4	25.16
CDY52087	Canola	nucleus, plastid	23.97	23.57
AT3G24860.1	Thale cress	nucleus	25.0	23.55
CDY39785	Canola	nucleus	22.26	23.38
CDX77381	Canola	nucleus	23.63	23.23
Bra015090.1-P	Field mustard	nucleus	23.63	23.23
Zm00001d021389_P001	Maize	cytosol	20.55	17.91
Zm00001d006331_P001	Maize	cytosol	19.18	16.77

Protein Annotations

EMBL:HQ858667	EnsemblPlants:Zm00001d052798_P001	EnsemblPlants:Zm00001d052798_T001	EnsemblPlantsGene:Zm00001d052798	EntrezGene:100857060	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR006578	InterPro:MADF-dom	PANTHER:PTHR31307
PANTHER:PTHR31307:SF17	PFAM:PF13837	ProteinID:AQK58081.1	SEG:seg	SMART:SM00595	UniParc:UPI0001FF9200
UniProt:F1DJQ9	MapMan:15.5.20	:	:	:	:

Description

Trihelix-transcription factor 3Homeodomain-like superfamily protein

Coordinates

chr4:+:201305242..201306120

Molecular Weight (calculated)

32916.8 Da

IEP (calculated)

8.113

GRAVY (calculated)

-0.794

Length

292 amino acids

Sequence
(BLAST)

001: MADEPPPPAL ARKSAPAQPW SHVETMHLID AYEERWTALR RGQLKAHQWE EVATEVAARC AANPGVIAQR KTGTQCRHKL EKLRKRYRTE GARPVTSLWP
101: YFRRMDRLER GALAAYPAAA SSPPAADGDE EEDEEDVQEE EEVEELVPRN NTRSINGIIR EFGTGLAPRH PQLQLHPPPS SITPSTAPPR KRVAYEAFQA
201: KDEAVAVEMT RRGGSGWAVA QLSVVVRDFG EGVMRLERRR MEVQWEIERG WQEADARHAR MLKDALRQFR DTAAAAACVL PPKKARRDHG DS

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.