CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67755
CDX71939
CDX90788
CDX94243
CDX98311
CDY05122

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24860.1	CDX67755	AT3G58630.1	21798944
AT3G24860.1	CDX71939	AT3G58630.1	21798944
AT3G24860.1	CDX98311	AT3G58630.1	21798944
AT3G24860.1	CDX90788	AT4G10840.1	21798944
AT3G24860.1	CDX94243	AT4G10840.1	21798944
AT3G24860.1	CDY05122	AT4G10840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52087	Canola	nucleus, plastid	61.15	57.24
CDX77381	Canola	nucleus	58.63	54.88
AT3G24860.1	Thale cress	nucleus	57.55	51.61
VIT_07s0005g06670.t01	Wine grape	nucleus	33.45	32.98
GSMUA_Achr6P04170_001	Banana	nucleus	31.65	32.47
CDY48253	Canola	nucleus	20.86	32.4
KRH07500	Soybean	cytosol, mitochondrion, nucleus	29.14	30.45
KRH66081	Soybean	cytosol	28.78	28.57
Solyc06g083430.1.1	Tomato	nucleus	30.94	26.46
PGSC0003DMT400051788	Potato	nucleus	30.22	25.77
CDX83751	Canola	nucleus	11.87	25.0
CDX74679	Canola	nucleus	25.9	23.84
TraesCS5B01G564200.1	Wheat	nucleus	26.26	23.7
TraesCS4A01G315300.1	Wheat	nucleus	26.26	23.7
TraesCS5D01G550500.1	Wheat	nucleus	25.18	23.03
CDX95611	Canola	nucleus	29.14	22.95
EES15479	Sorghum	nucleus	25.54	22.47
Zm00001d052798_P001	Maize	nucleus	23.38	22.26
CDY71514	Canola	nucleus	24.1	22.26
Os08t0484700-01	Rice	nucleus	25.18	22.22
CDX83420	Canola	nucleus	28.06	22.16
CDX73485	Canola	nucleus	23.38	21.17
Zm00001d031266_P001	Maize	nucleus	24.1	21.0
CDY42958	Canola	nucleus	23.38	20.97
CDY35602	Canola	cytosol	23.38	15.7

Protein Annotations

EnsemblPlants:CDY39785	EnsemblPlantsGene:GSBRNA2T00068588001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR31307
PANTHER:PTHR31307:SF17	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY39785	ProteinID:CDY39785.1	SEG:seg
UniParc:UPI0004EEF424	UniProt:A0A078HMM7	MapMan:15.5.20	:	:	:

Description

BnaA09g10370DBnaA09g10370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMM7]

Coordinates

chrLK032457:-:141403..142294

Molecular Weight (calculated)

32246.5 Da

IEP (calculated)

11.013

GRAVY (calculated)

-1.045

Length

278 amino acids

Sequence
(BLAST)

001: MAIDKKCQRR DRNTIIRPKI QKSTPSFAAT SPQKNPQPST SSAVARRTQP VLWTQNETLL LIESHKDKCY SLGRGPLKPS HWEEIAVAVS ARSDGVDRSA
101: TQCRHKMEKL RKRFRAERQS MGPISLWPFY SQMEELDNNN NNNPAPISAR SLTRLPPSSS HHEDEDEEED ERQRKSRSIN YIVRRPGTVN RGLLQWGQKE
201: RSKTKRKDGE ERRRRRARGV ASEIRSFAER VMVMEKKKME FAEETVKLRK EMEIKRVKLI QSSQAQILQS LHTVLGSF

Best Arabidopsis Sequence Match ( AT3G24860.1 )
(BLAST)

001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.