Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71514 | Canola | nucleus | 56.06 | 24.58 |
| CDX73485 | Canola | nucleus | 55.3 | 23.78 |
| VIT_13s0084g00800.t01 | Wine grape | nucleus | 51.52 | 21.32 |
| KRH13365 | Soybean | nucleus | 50.0 | 19.76 |
| KRH30077 | Soybean | nucleus | 50.76 | 19.65 |
| KRH20709 | Soybean | nucleus | 48.48 | 19.63 |
| Solyc01g096470.2.1 | Tomato | nucleus | 49.24 | 18.95 |
| PGSC0003DMT400013829 | Potato | nucleus | 49.24 | 18.9 |
| KRH62829 | Soybean | nucleus | 49.24 | 17.86 |
| GSMUA_Achr4P05890_001 | Banana | nucleus | 40.91 | 17.65 |
| CDY48253 | Canola | nucleus | 23.48 | 17.32 |
| GSMUA_Achr9P22780_001 | Banana | mitochondrion | 43.18 | 16.57 |
| Zm00001d021389_P001 | Maize | cytosol | 40.91 | 16.12 |
| KXG36174 | Sorghum | cytosol | 40.91 | 16.02 |
| Os09t0558200-01 | Rice | cytosol | 40.15 | 15.77 |
| Zm00001d006331_P001 | Maize | cytosol | 39.39 | 15.57 |
| TraesCS5B01G362600.2 | Wheat | nucleus | 38.64 | 14.61 |
| TraesCS5D01G369500.2 | Wheat | nucleus | 38.64 | 14.57 |
| TraesCS5A01G360100.1 | Wheat | nucleus | 38.64 | 14.53 |
| HORVU5Hr1G088770.7 | Barley | nucleus | 40.15 | 14.52 |
| CDY39785 | Canola | nucleus | 25.0 | 11.87 |
| CDY42958 | Canola | nucleus | 25.0 | 10.65 |
| CDY52087 | Canola | nucleus, plastid | 23.48 | 10.44 |
| CDX74679 | Canola | nucleus | 23.48 | 10.26 |
| CDX83420 | Canola | nucleus | 26.52 | 9.94 |
| CDX77381 | Canola | nucleus | 21.97 | 9.76 |
| CDX95611 | Canola | nucleus | 25.76 | 9.63 |
| CDY35602 | Canola | cytosol | 28.03 | 8.94 |
| HORVU5Hr1G088750.1 | Barley | cytosol | 9.09 | 7.69 |
Protein Annotations
| EnsemblPlants:CDX83751 | EnsemblPlantsGene:GSBRNA2T00139488001 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF7 | PFAM:PF13837 | ProteinID:CDX83751 |
| ProteinID:CDX83751.1 | SEG:seg | UniParc:UPI0004EE503A | MapMan:15.5.20 | : | : |
Description
BnaC08g18940D
Coordinates
chrLK031834:+:249396..249843
Molecular Weight (calculated)
14572.2 Da
IEP (calculated)
10.330
GRAVY (calculated)
-0.669
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MERRAVSSLL EAYETKWVLR NRAKLKGQDW EDVAKHVSSR ASHTKSPKTQ TQCKNKIESM KKRYRSESAT ANGSSSPWKC FHLCPPSASA CFASELLCSF
101: ALTRTSVAGG DSSAAATSCC SDVSRIQRRR HG
101: ALTRTSVAGG DSSAAATSCC SDVSRIQRRR HG
001: MENGESNQEN LKSLNHDESL KKPSASSVVV DRLKRDEWSE GAVSTLLEAY ESKWVLRNRA KLKGQDWEDV AKHVSSRATH TKSPKTQTQC KNKIESMKKR
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.