Factsheet for PGSC0003DMT400013829

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096470.2.1	Tomato	nucleus	71.8	72.01
VIT_13s0084g00800.t01	Wine grape	nucleus	49.13	52.98
CDY71514	Canola	nucleus	45.06	51.49
Bra007069.1-P	Field mustard	nucleus	45.64	50.48
AT3G54390.2	Thale cress	nucleus	45.35	50.0
CDX73485	Canola	nucleus	44.48	49.84
CDX83751	Canola	nucleus	18.9	49.24
KRH20709	Soybean	nucleus	46.51	49.08
KRH30077	Soybean	nucleus	47.97	48.39
KRH13365	Soybean	nucleus	45.93	47.31
KRH62829	Soybean	nucleus	48.55	45.88
GSMUA_Achr4P05890_001	Banana	nucleus	34.59	38.89
Os09t0558200-01	Rice	cytosol	31.98	32.74
GSMUA_Achr9P22780_001	Banana	mitochondrion	32.56	32.56
Zm00001d006331_P001	Maize	cytosol	30.23	31.14
TraesCS5B01G362600.2	Wheat	nucleus	31.4	30.95
Zm00001d021389_P001	Maize	cytosol	29.94	30.75
KXG36174	Sorghum	cytosol	29.65	30.27
HORVU5Hr1G088750.1	Barley	cytosol	13.66	30.13
TraesCS5D01G369500.2	Wheat	nucleus	30.52	30.0
TraesCS5A01G360100.1	Wheat	nucleus	30.52	29.91
HORVU5Hr1G088770.7	Barley	nucleus	30.81	29.04
PGSC0003DMT400051788	Potato	nucleus	17.44	18.4
PGSC0003DMT400004269	Potato	plastid	17.15	17.93
PGSC0003DMT400052836	Potato	nucleus	17.44	14.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400013829	EnsemblPlantsGene:PGSC0003DMG400005408	EntrezGene:102584731	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF7
PFAM:PF13837	PGSC:PGSC0003DMG400005408	RefSeq:XP_006347663.1	SEG:seg	UniParc:UPI000294EB9B	UniProt:M1A3D7
MapMan:15.5.20	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005408]

Coordinates

chr1:+:74191983..74194344

Molecular Weight (calculated)

37807.5 Da

IEP (calculated)

9.916

GRAVY (calculated)

-0.811

Length

344 amino acids

Sequence
(BLAST)

001: MDKEAGNHHH HQNQNHGISN KDEFSPRIKP PQNYHVATGN SDRLKRDEWS EGAVSCLLEA YEAKWILRNR AKLKGQDWED VAKHVSARVN STKSPKTQTQ
101: CKNKIESMKK RYRSESATAA DASSWPLYPR LDLLLRGNNA SAASSSLIPP PLPPAAPPNT NCVIDAVEPT QPPIVLPPPP PPLPPSPALP IGNGDQNSHG
201: SNGLDRGIKQ EDILMDAKLS DNAAAADHKN ATATNSSSTP ALYSDNKSKS KLRSKNKRKR AVEGWEIGES IRLLAEVVVR SEQARMETMR DIERMRAEAE
301: AKRGEMDLKR TEIIANTQLE IAKLFASITK GSVDSSLRIG RSSS

Best Arabidopsis Sequence Match ( AT3G54390.2 )
(BLAST)

001: MFNSIHSLKS HLKKKYMENG ESNQENLKSL NHDESLKKPS ASSVVVDRLK RDEWSEGAVS TLLEAYESKW VLRNRAKLKG QDWEDVAKHV SSRATHTKSP
101: KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDHLLR GTQPQPQPQA VLPLNCSVPL LLLEPPLPAV AHPPQISYGS NGVGKIPKED GFKPENKPEK
201: DAEMDTDSST PVVKTKVRGK KVKRRYKEEK EEIAGSIRWL AEVVMRSERA RMETMKEIER MRAEAEAKRG ELDLKRTEIM ANTQLEIARI FAAAASSGQN
301: KGVDSSLRIG RN

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.