Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G369500.2 | Wheat | nucleus | 85.39 | 85.14 |
| TraesCS5A01G360100.1 | Wheat | nucleus | 81.95 | 81.48 |
| HORVU5Hr1G088770.7 | Barley | nucleus | 64.47 | 61.64 |
| Os09t0558200-01 | Rice | cytosol | 53.3 | 55.36 |
| Zm00001d006331_P001 | Maize | cytosol | 52.72 | 55.09 |
| Zm00001d021389_P001 | Maize | cytosol | 51.58 | 53.73 |
| KXG36174 | Sorghum | cytosol | 50.72 | 52.52 |
| GSMUA_Achr4P05890_001 | Banana | nucleus | 34.38 | 39.22 |
| CDX83751 | Canola | nucleus | 14.61 | 38.64 |
| CDY71514 | Canola | nucleus | 30.37 | 35.22 |
| GSMUA_Achr9P22780_001 | Banana | mitochondrion | 34.67 | 35.17 |
| Bra007069.1-P | Field mustard | nucleus | 31.23 | 35.05 |
| CDX73485 | Canola | nucleus | 30.37 | 34.53 |
| Solyc01g096470.2.1 | Tomato | nucleus | 32.38 | 32.94 |
| VIT_13s0084g00800.t01 | Wine grape | nucleus | 30.09 | 32.92 |
| AT3G54390.2 | Thale cress | nucleus | 29.23 | 32.69 |
| PGSC0003DMT400013829 | Potato | nucleus | 30.95 | 31.4 |
| KRH20709 | Soybean | nucleus | 28.65 | 30.67 |
| KRH13365 | Soybean | nucleus | 28.08 | 29.34 |
| KRH30077 | Soybean | nucleus | 28.08 | 28.74 |
| KRH62829 | Soybean | nucleus | 29.51 | 28.3 |
| TraesCS5B01G564200.1 | Wheat | nucleus | 18.62 | 21.1 |
| TraesCS1B01G229500.1 | Wheat | nucleus | 17.48 | 19.24 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G362600.2 | EnsemblPlantsGene:TraesCS5B01G362600 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF7 | PFAM:PF13837 | SEG:seg |
| MapMan:15.5.20 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:541916322..541918520
Molecular Weight (calculated)
37048.0 Da
IEP (calculated)
6.545
GRAVY (calculated)
-0.763
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGLPDAAPP APAPQQQPKR DEWSESGISR LLEAYEAKWL LRNRAKLKWS DWVDIAHDVS AHCSSSDHAS KPGAAAGGTA KTPNQCKNKV ESMKKRYRAE
101: SAAATRAGVA GAASASGGPS WRFFGRMDGL LKGPAAGCSG QPQAQPEPSN DGIVQPRAPL KAEPEADAEA DTALQQPPDT AGPPGALSEL LNADANGSAT
201: VKAEKTVDQA THKETSRAAD SDAANVSSPR SKEVEAEAND DGAEEAWDAP GRKRKGPELD VARSIELLAS SFVKIERARL EVYRDTERMR AEAEVKRGEM
301: ELRRTEIMAK TQLQIARLFA KRLKECVGGN GGSSSQVDTL AKKGENGSG
101: SAAATRAGVA GAASASGGPS WRFFGRMDGL LKGPAAGCSG QPQAQPEPSN DGIVQPRAPL KAEPEADAEA DTALQQPPDT AGPPGALSEL LNADANGSAT
201: VKAEKTVDQA THKETSRAAD SDAANVSSPR SKEVEAEAND DGAEEAWDAP GRKRKGPELD VARSIELLAS SFVKIERARL EVYRDTERMR AEAEVKRGEM
301: ELRRTEIMAK TQLQIARLFA KRLKECVGGN GGSSSQVDTL AKKGENGSG
001: MENGESNQEN LKSLNHDESL KKPSASSVVV DRLKRDEWSE GAVSTLLEAY ESKWVLRNRA KLKGQDWEDV AKHVSSRATH TKSPKTQTQC KNKIESMKKR
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.